RNA id: CI01000051_06898228_06901582.mRNA



Basic Information


Item Value
RNA id CI01000051_06898228_06901582.mRNA
length 712
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000051_06898228_06901582
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6898228 ~ 6901620 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGCAGCTGGGTGTGTTGTGTCAGAGGATCGTGGTCACCATCTGCCCGCTACTGACACCTTTGTTCCGTGTTGGGATTCCGGCCCTGACCTCACCCTGAGTCAATTCATCTGGCCATTTCCTGCCCATGTGTTCTTCAAGCCAAGTATGAATGGTAAGGTTGGGAATGGAGCAGCGGGCGGCATGCTGGCCTGTATTGAGGGTCTACCGCCGCTGCCCAAGAGCCTGAGCGGACTGCTCAACTCCAGCGGCGGGTCGTGGAGAGAGATGGAGAGGATGTATGTGAAGAAGACCATGATTCAGGATGACTTGAGCCGAGGACGGAATAACACGGACAGTCTGCTGGCGAATAAACCAGCAAACCTGGATGCCGCCCTGGCTTTGCTTAGAAAAGAGATGGTGGGTTTGCGGCAGCAGGACATGTCCCTGCTCTGTCAGCTCTGGTCCCTTCACGAGTCCATCCAGGAGTACAAAGGCAGCTGCCAGGACCTCTCCGCTGTGTCCAGTGCAGATGGACCGTATGGAATGGAGAACGGCTATTTCGATGAAGATGAGGAATATTATACTGAATCCGGTATGACGCCAACCGAAACGCCAGATGGAAATGATACATCTCCTAAAAACGGGACATCCAAGGACAGCTGGATACATGACTCGTTCCATATCACAATATAAAATGCTTGACTTTTTTTTCTTTTTTTTTTTTTTCGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU250886 lncRNA upstream 101622 6794991 ~ 6796606 (+) True G221188
TU250892 lncRNA upstream 104292 6785486 ~ 6793936 (+) True G221194
TU250767 lncRNA upstream 166943 6729783 ~ 6729852 (+) True G221089
TU250741 lncRNA upstream 565739 6329977 ~ 6332489 (+) True G221065
TU250738 lncRNA upstream 582040 6315970 ~ 6316188 (+) True G221062
TU250966 lncRNA downstream 45764 6947384 ~ 6947895 (+) True G221254
TU250969 lncRNA downstream 142043 7043663 ~ 7152004 (+) False G221256
TU250968 lncRNA downstream 142111 7043731 ~ 7152004 (+) False G221256
TU250970 lncRNA downstream 142111 7043731 ~ 7152095 (+) True G221256
TU250996 lncRNA downstream 259546 7161166 ~ 7161367 (+) True G221280
CI01000051_06887510_06888144.mRNA mRNA upstream 10049 6887158 ~ 6888179 (+) True CI01000051_06887510_06888144
CI01000051_06825895_06830637.mRNA mRNA upstream 67591 6825895 ~ 6830637 (+) False CI01000051_06825895_06830637
CI01000051_06655818_06730954.mRNA mRNA upstream 167190 6655818 ~ 6731038 (+) False CI01000051_06655818_06730954
CI01000051_06398882_06401885.mRNA mRNA upstream 495692 6398882 ~ 6402536 (+) True CI01000051_06398882_06401885
CI01000051_06373457_06388474.mRNA mRNA upstream 509631 6373457 ~ 6388597 (+) True CI01000051_06373457_06388474
CI01000051_06917282_06944243.mRNA mRNA downstream 15662 6917282 ~ 6944267 (+) True CI01000051_06917282_06944243
CI01000051_06948569_06952962.mRNA mRNA downstream 46949 6948569 ~ 6954096 (+) True CI01000051_06948569_06952962
CI01000051_06970612_06971675.mRNA mRNA downstream 68802 6970422 ~ 6971842 (+) True CI01000051_06970612_06971675
CI01000051_06985393_07011299.mRNA mRNA downstream 81734 6983354 ~ 7011403 (+) True CI01000051_06985393_07011299
CI01000051_07015896_07020569.mRNA mRNA downstream 113763 7015383 ~ 7020614 (+) True CI01000051_07015896_07020569
TU250885 other upstream 65160 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 1846195 5018305 ~ 5052033 (+) False G219803
TU249297 other upstream 1848418 4944958 ~ 5049810 (+) False G219803
TU251039 other downstream 440421 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 507903 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 1204023 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 1441322 8342942 ~ 8343448 (+) True G222727

Expression Profile