RNA id: CI01000051_06910132_06916487.mRNA


Basic Information

Item Value
RNA id CI01000051_06910132_06916487.mRNA
length 1331
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000051_06910132_06916487
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6909440 ~ 6916487 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCATGCAAGAAACCTGTTGACAAATACATAGAATATGATCCAGTTATTATTCTGATAGATGCCACTCTATGCAAAACCCAGGCCTTTAGACATATACTCTTCAACACTGAGATCAATATCCACTGGAAACTGTGTGTGTTCTGTCTGCTGTGTGAGGCGTACCTACGCTGGTCCCTCCTGCAGGGGTCTCAGCCCAGCGATGACCCCGCTGACATCATCCGTTACACTAAAGAATGGGAGTTTTACTGCATGTTTGCACTGGCTGCACTGGAGTTGGCCGTGTTCTGCATAGGTGTGTTGGTCATTCTCTGGATGGCGCAACTCTTCTGTGGAGCTTCTTTAGAATTCACTCCGCTGTTGAAGGCTCTTCTGCTGTCCGGCTATGGCAAAGTGCTGTTAATTCCAGCTGTCATCTGGGAGCACGATTTCTCCCCGCTCTGCTTCAGCCTCATACGACTGTTTGTTTTGACCTCCAATTCACAAGCCATCAGAGATGTGGATGTAGGGGCATGCTTGTTATTACTTCAGAGATGTTGTTTGAGCAAGATGTTTTGTACAAAGGAATTTATTGTGAAACTAAATGAGGTCATAGAGAGCAAATTGTTCATCTTTACTATGGTTACCACATGGTTATGAGGTTTTCCATGCATATATGTCTGGTGTTTACTAAGCTAACCCCTTTTAAGACCAGTAACTTGTCTTCATTTGAGAATTCTCCTCATACACAGAAACTAGTTTGGGTCTATATAGGCAGAAAAAGAGCAGGCCTGCAGTTTTCACGGAATCCTGTATGTTTATAAAGACTTTGAAGGGACAGCTTCACATTCCTGAGGTCATTTGTCAAATTCCTCAATTAGCTCTGCTGAGAGAAGATGTTAACTCAAATATACTACAGATGGCTGTGGACCTGTGTCGACATGATGCGTTCAAATACTGTAATGATCTGAATGTCTGTTTTATATTGGCTGTTTTATGTATGGACTTGTGTAATTTATCTCTGTTACATAAATGTGAAGTGTGGACTTTCAGTATGAACTTGTGCAACTTGTTCTGAACAAACTCAGGGAATGATTCTTGCACTTCTTTGAACCCAGCTTTATGTTTTGTAACGGTTTAGTTTTTTTCTGAGGCAGTGCTGAGGGGGATTGTGGGTATTAAAGAGTAAGTTTTTAAAAAAATACAGTGTGTATTTGCTTCAAAATCGGTGCCCTAAAATAGTTTACAAGTTAGTTATTTTAGTATTATTAAATACTGTGTAAAAACACTAATTTTCTGGCAGCAGGGGAAAATGTCTCATTAAAAACAGAAAAATACTGTCAGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251938 lncRNA downstream 146020 6763190 ~ 6763420 (-) True G222137
TU251843 lncRNA downstream 155172 6735154 ~ 6754268 (-) True G222055
TU251842 lncRNA downstream 219535 6663608 ~ 6689905 (-) True G222054
TU251841 lncRNA downstream 236816 6663608 ~ 6672624 (-) False G222054
TU251677 lncRNA downstream 512453 6396781 ~ 6396987 (-) True G221890
TU251977 lncRNA upstream 56595 6973082 ~ 6994996 (-) True G222173
TU251994 lncRNA upstream 94546 7011033 ~ 7011313 (-) True G222190
TU251998 lncRNA upstream 97618 7014105 ~ 7014311 (-) True G222194
TU251999 lncRNA upstream 100472 7016959 ~ 7051677 (-) True G222195
TU252051 lncRNA upstream 195127 7111614 ~ 7112897 (-) True G222243
CI01000051_06884323_06886377.mRNA mRNA downstream 22801 6884008 ~ 6886639 (-) True CI01000051_06884323_06886377
CI01000051_06837978_06881158.mRNA mRNA downstream 27734 6837414 ~ 6881706 (-) True CI01000051_06837978_06881158
CI01000051_06803307_06824913.mRNA mRNA downstream 84527 6803307 ~ 6824913 (-) True CI01000051_06803307_06824913
CI01000051_06739181_06742303.mRNA mRNA downstream 167137 6738789 ~ 6742303 (-) False CI01000051_06739181_06742303
CI01000051_06423541_06426013.mRNA mRNA downstream 481827 6422096 ~ 6427613 (-) True CI01000051_06423541_06426013
CI01000051_06958650_06963551.mRNA mRNA upstream 42085 6958572 ~ 6963821 (-) True CI01000051_06958650_06963551
CI01000051_06966165_06969998.mRNA mRNA upstream 49606 6966093 ~ 6970217 (-) True CI01000051_06966165_06969998
CI01000051_07218226_07226180.mRNA mRNA upstream 301655 7218142 ~ 7226726 (-) True CI01000051_07218226_07226180
CI01000051_07288569_07296096.mRNA mRNA upstream 371598 7288085 ~ 7296096 (-) True CI01000051_07288569_07296096
CI01000051_07403086_07404051.mRNA mRNA upstream 485580 7402067 ~ 7404784 (-) True CI01000051_07403086_07404051
TU251621 other downstream 775861 6132773 ~ 6133579 (-) True G221840
TU251315 other downstream 1390616 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 2751337 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 3947946 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 4068808 2840270 ~ 2840632 (-) True G218861
TU252631 other upstream 1425662 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 1426483 8342970 ~ 8343438 (-) True G222730

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034128 True 3335 mRNA 0.42 5 NC_007131.7 3997684 ~ 4011994 (+)