RNA id: CI01000051_07403086_07404051.mRNA


Basic Information

Item Value
RNA id CI01000051_07403086_07404051.mRNA
length 2718
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000051_07403086_07404051
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7402067 ~ 7404784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGATTATAATCATAATCATAATCACATATAATCGTGTGATGCTGACGCAGGAGCTGGCCAATAATGAGTCGCGTTCTGATTAGAACCTGGAAAGCGCTGCACTGTGTTTACTACCTGAACAGCGTAGGAGACTGACATGGAAGAGAAGAACTTGAATAAATTACCACCTCGGGTGTGCATTATTTTCTAATAATTCAACGGCCAGTCGCCAATTATTCCTTACGTTCCCTTGTTTTAATTTAGTTAAATCATGGCTATGTTTTAACTAAAATGAGGGAATGAATTAGCACAACATAGCCACAGTTTACCTAAAATGAGGGGACGAATGAATAAATCATGGGAATGAATTCTTAATTTCTATGTCCTGTGCGAGGCTCCGTACATTACGGATCTTACCTAATTTTTTTTGTAACATAGGCCTACTCCATGAAAGAAAGATGCACACATTTAACATTTCCCACATGGGAAAAACCCCTACTGGCCTACACATATGGCTACAAATGCCAAATATCTTTTATTGTTGGATCTTTTGGTAAAGTTACCAGATTCACATCTTTTATCTATGTTAATGTTTAACTTGACTTGTCACATTGTTTGCTTTTGTACGGATTAAACCGTGTACTTTAGCACTGTCCTTTTTGGCCATTTCAAAACATCTGGTCTCAGTTCCACTGCACAAGTATCTCTTCATGTTTGACCTACTAAGAAGACCAGAATAAAACATTTTAAAGATGGGAAATCATCCCTGCACCCCAACTCCAGCAACTATAGACAGTATTTACAAGGTTGCCCAGGACAATGGGATCCTCCCTGACATCACTCTTGATGGGACGGTGGCAAATTTACTGTCCCTCAATTCCAGCATTGCGCTCAACCTGCAGTATGCGGCCGTCCAGCAGAGCCTGACCACAGACCAACTGGCGGCTTTAGACACCAACCTGACCTCTATTTTCGGACAGAGCTCTAATGTATCTTACGGAGGTGTCGGAGTTGTGGCGCTTGCTTTATCTTTTCTGCTTGAAGCTCTTGTGTCCAGTATTGTCGGTCAGACGGATGGTGGGACCACAGACCCATTTAAGAAGGCTTTTGGATCAGATAACTCTTCGGAAATCGCCAGCATTGCGAGTGAATACCTCAAACTGGTGTCTAAGAGGGCCAATAACATCGAGGAAATGGGAGAAATAACTGAACTCTATGACCAGAAACTGAAATATGCTCTAATCGAGCTCTATGAGAGCATGACTTTGGATCAACAGCTGAACACGGATAGTATTAAGCAGTGGATCAATGGAGCTGCGATCCACCTGCACATGAGGATTCATGGGATTCGTTTAGCATCTGTCCCTAAAGGTACAGCTGAATCGCTGCGTTTGTCATACCGAACAGGTTTGGCGAGGTTAATTCAGCTCTATAATGGTTACTTGAGGCAGTATGTAAGAGAGCGGTCCACCACGCAAGTTCCTCCGGTAAAGGCGGGATTCTTAATCGTTGAACCTGGTAAGAAGGTTAGACACCGTGTGGTCCACAACACCTGCCAATCACAGGCTATTGCCACTGCGGTAGTGGCCCGAATTTTATCTGCACAGGATATTGGAAAGACAGAAAGATTTTTTGATGAAGCTGGTCAAATCTTAGACCGCTTGCTTCAACAGAGAGACACTTTTGAGCTACACAGGCAACAGAAGATTAAATCTTAACTGGATGTGGAATTCCTTCTGAGGTGATTTTTACTAATACTATATACTCTGTTGTTTAAACACATTGTTAAACTACGCCACATTTTAGAATAGCTACATCTCTGCTGTTTTTAAGTTTGATACCATTGCCATGATATGCTAACTACGGTAAGTGCTGGATGTATTAGCATTAGCCTACTTAATGTCCCCTTGTGGTGAAAATCAGGTTTTTAATGTTGTTCATATGTCTATCTGGTGTTTTTAACATGCTTTAAGACAAACCATGTGCAAATTCATAAGTCGACACCATTGCTGAGTATTTTGTCTTTAAAACTGCAGTAAACCAAAGACAGTCTCAAACCCGCGGTTTGAAATCGCTGGTGTTTCTAAAGTCACAAAAACTACCTTGTAACCAATCACGTCAATGTGCCGGCGGGCTTTATCATATCATTACTGACCACGCAAGGGAGTCTCAAAAGAAGGTTATCCCGGTATATTTTTCTGTTGATATGAAAAATCGGGTAGATTTAGCAATATGGCGGGTGTGTGATGTATCTTACGATGTTATCATGAACTATGCCTTTCTCCACTGACATTCTGAGTTGTTCAAAGCTGTCTGACTCGTGAATGTGAACATGGTTTGTGTAACATTAGCAACACATTATTAGCTGTTTGATAACGTAGTCAAGCAAAACTCTAATCATATTAATTACCGTTATGTGTCCGACATTGTAAAAAGCGCTACCATTGTGCAGCGTTTACCTCAGTAAGTTGACGGAGTGGATCTCGTCTGAGCTCGTGCGAGTGAGTGGAGGCGGGGCTAATTATCATATTCATAGATCCGTGTATATTAAATGAGGCAAGGGTGTAGAGTTACATTCAAGTTATTTTAAGGGATTAATTTTTTTTTTTTTCTTTTTTTTTTTCTCCACAGGAAAAAAACGTTTAAATATGTAATTTTGGTGATCAAAGATGAGTTTTAAAGGATAAAATGATTGACTACAAGGGGACTTTAATGAAACAGCTTACCGAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252207 lncRNA downstream 26077 7375718 ~ 7375990 (-) True G222370
TU252074 lncRNA downstream 31067 7366892 ~ 7371000 (-) True G222262
TU252200 lncRNA downstream 44682 7357149 ~ 7357385 (-) True G222363
TU252198 lncRNA downstream 45755 7356103 ~ 7356312 (-) True G222361
TU252193 lncRNA downstream 59539 7342108 ~ 7342528 (-) True G222356
TU252215 lncRNA upstream 53458 7458242 ~ 7458443 (-) True G222378
TU252218 lncRNA upstream 54318 7459102 ~ 7461790 (-) False G222379
TU252217 lncRNA upstream 55255 7460039 ~ 7461654 (-) True G222379
TU252229 lncRNA upstream 62647 7467431 ~ 7785815 (-) True G222386
TU252225 lncRNA upstream 63775 7468559 ~ 7506222 (-) True G222383
CI01000051_07288569_07296096.mRNA mRNA downstream 105971 7288085 ~ 7296096 (-) True CI01000051_07288569_07296096
CI01000051_07218226_07226180.mRNA mRNA downstream 175341 7218142 ~ 7226726 (-) True CI01000051_07218226_07226180
CI01000051_06966165_06969998.mRNA mRNA downstream 431850 6966093 ~ 6970217 (-) True CI01000051_06966165_06969998
CI01000051_06958650_06963551.mRNA mRNA downstream 438246 6958572 ~ 6963821 (-) True CI01000051_06958650_06963551
CI01000051_06910132_06916487.mRNA mRNA downstream 485580 6909440 ~ 6916487 (-) True CI01000051_06910132_06916487
CI01000051_07410144_07439528.mRNA mRNA upstream 4679 7409463 ~ 7439528 (-) True CI01000051_07410144_07439528
CI01000051_07580256_07582183.mRNA mRNA upstream 175457 7580241 ~ 7582183 (-) True CI01000051_07580256_07582183
CI01000051_07584669_07585335.mRNA mRNA upstream 179571 7584355 ~ 7585335 (-) True CI01000051_07584669_07585335
CI01000051_07618053_07621854.mRNA mRNA upstream 213258 7618042 ~ 7621854 (-) True CI01000051_07618053_07621854
CI01000051_07836858_07853522.mRNA mRNA upstream 432041 7836825 ~ 7854111 (-) True CI01000051_07836858_07853522
TU251621 other downstream 1268488 6132773 ~ 6133579 (-) True G221840
TU251315 other downstream 1883243 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 3243964 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 4440573 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 4561435 2840270 ~ 2840632 (-) True G218861
TU252631 other upstream 937365 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 938186 8342970 ~ 8343438 (-) True G222730

Expression Profile