RNA id: CI01000051_08046197_08069874.mRNA



Basic Information


Item Value
RNA id CI01000051_08046197_08069874.mRNA
length 1158
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000051_08046197_08069874
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8045895 ~ 8069917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAGATAAAATGCCAATTTGAAAGGAGATAATTCAGAACTTATATGTTCCTTTGGTGTCACCTCAAGGAGGGAGGCAGGTTTTATAAGTTACATACTATAAAATCACAAATTTCATTTACATTATAGTGCAGGGGTGCAAAACTCAATTTCTGGAGGGCCACAGCCCTGCAGAGTTTAGTTCCAAACCTGCTCCAACACACATGTGTAGCTTTCTTCAGGTATTATAAACCTCCTTGGCTTGATGTGCTCGTGCAGTACCGCAAGAACTCAAAAGGGGGTGCAAAACATCAGCAAAGATGCTCAGTGATTCACTGGAGGCCTTTGGTAAGAATCAGGTTCACAGATTCAGCTTACAAAGTGCTCAAGTAAAGCTTTTGCTGCCGTCCGGCAAAAGTACAGCTCCGTTTGAAGCTTTATTGGAAAGAGCTTCTATTTTCTCCCTGTTAATTGACATTATGGACAAAAACTCTATTGCATATCAGATGGAGTTGACACTTTTCATGGTCGTCTTCCTGTTTTGGGTCACCGTGTGCGCGGATGACAGTAAGATCATTTCAGACCGGTATGCTGTGTACTGGAACAGTACGAATCCCAGTTTGACCCAGATAGTTAATTATGATGGAGAATTCTCTCCAACACTGAGGGCAGTCGCAAGGTCAAATGAACGATCCATTTCTATCCTTTTTCTTCCAGATGTTTGGAGTTCAGTGACAATGGCAACAATCACAGGAGATTCAGTGTCATTAACCTCTTATTCCATCACCATTAACCCTCCGGTGAAGAAGAAAAAACTAAACCAAACACATCAGGGGGCCCTTTACCCAACACCCACTCTGGCGACACCCACTCTGGACAGTGGGCGACACTTTCAATGTGGAATAGCTTCAGGGTATCATTCCGGTCACAATCACATCGCCACACTGAGTTATGGCACAGCTGTTAAACACTGGATTTTATCTATCTATCTGATATCTGACAGAAAACTTAAGACACTTGGAATGAGACCTAGTTACACACGGGTTCGAGCTATTTGGATCCGAGTAGAAAGAAATGGAATGAATTATGCCGTGCATTTATGTAATGGCTCTTTTAAAGACATGCTTCCCTGATCAAAAAGAGCCGGTTCGACACAGCCTCCAGCCTCCCAGTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251290 lncRNA upstream 4041 8041617 ~ 8041854 (+) True G221552
TU251277 lncRNA upstream 29360 8016244 ~ 8016535 (+) True G221539
TU251276 lncRNA upstream 36544 8008915 ~ 8009351 (+) True G221538
TU251268 lncRNA upstream 49598 7996022 ~ 7996297 (+) True G221530
TU251035 lncRNA upstream 178867 7866916 ~ 7867028 (+) True G221315
TU252505 lncRNA downstream 154033 8223950 ~ 8224280 (+) True G222631
TU252516 lncRNA downstream 162749 8232666 ~ 8232884 (+) True G222642
TU252519 lncRNA downstream 163553 8233470 ~ 8234002 (+) True G222645
TU252527 lncRNA downstream 173447 8243364 ~ 8243605 (+) True G222653
TU252530 lncRNA downstream 176623 8246540 ~ 8246748 (+) True G222656
CI01000051_07978982_07979269.mRNA mRNA upstream 66592 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
CI01000051_07963621_07976671.mRNA mRNA upstream 67686 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_07954270_07957397.mRNA mRNA upstream 88336 7954270 ~ 7957559 (+) True CI01000051_07954270_07957397
CI01000051_07946087_07950464.mRNA mRNA upstream 94414 7946016 ~ 7951481 (+) True CI01000051_07946087_07950464
CI01000051_07938052_07941645.mRNA mRNA upstream 103784 7937692 ~ 7942111 (+) True CI01000051_07938052_07941645
CI01000051_08171018_08172280.mRNA mRNA downstream 101101 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08211233_08214513.mRNA mRNA downstream 139805 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08381644_08388611.mRNA mRNA downstream 311674 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08425890_08429863.mRNA mRNA downstream 354780 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU251108 other upstream 632888 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 703349 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1212827 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2993862 5018305 ~ 5052033 (+) False G219803
TU251044 other downstream 35726 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 273025 8342942 ~ 8343448 (+) True G222727

Expression Profile