RNA id: CI01000051_08087374_08111384.mRNA



Basic Information


Item Value
RNA id CI01000051_08087374_08111384.mRNA
length 1712
RNA type mRNA
GC content 0.44
exon number 8
gene id CI01000051_08087374_08111384
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8086938 ~ 8111595 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAGACCCTGATAAAAAAGAAAAACAAATGTGGATTTCTTCTATTCTTTGACTTTGTTCTTTTCTCTTTCTTCTCTTCCATACAGAAGGAAAATGAACTTCTTCCCATTACATATAATTCAGATAGTGAATGGCACTGTACCACTGAACCACTGAAGTGATTTTCAAAAAAGGTTTTTAGTGAGCCAATGAAAAAGCTGCAAACTCTAAGCATGGCCAATCAGAGAAGGATTTGTGCATCCTTGTATCTGGGCGTCTGCGCTGCTGCTCTTGGCCGTTCTGGGGTTTTGCTCACACTGGGCCACTGTCAACAGTCTTTTTCAGTGAGTGGATTTACCACAAAACCAGCTCAAAAGATCCCACATCAGCTGATGAATCTGGTTAAACAATTAACTAAGCTCAGACTGAGCTCTAAACAGAACCAAGAACCAATAGAGGCAGCAGACGTTTGTATAAAACAGCCGCAAAGCTCTCTCAGAGCGGACCTTTCTGCAGAGAAAAGTCTAATAAGCCACACTCCTCTGTCAAAAAGACAAACTGAGGACTTTGGCTTGAAGAAATCTAATCCTCTGGCAGGAGAGCAACCTGTTCAGAGGAGCAACTCAGCTTATCCACTAACCCGCAAACCCCCGGTCCATGTTATAGACCTCATGAGTGTTCTTCAAAAGGATGAGCAGGCTGGAAACGTGGGGTTTCCGCTCCAGCTCGCTAATGCGGGGAGAGAGGTGCTGTGTAACTGCAGATTGCCGATGTGGGGAGCACTGCGTTCTGTGACCGTGCCTCCACTGAGACAAACAAAGCAGGCCCTTGAGCTTACTTCTATCAAACTTGCGCACCTTTGTACGACATGTAAATACACTCTGCGGAAATACAGTGAAAGATGTTCTGACAAGTTTGCTTGTAAGAAGCACATTTACAAATTAACAAGAACAGGCCGATTCCGAAATAAGCCTAATAATTATGTGCCTCTCATATCCTCAGCGGTTTGTGTTGCTCTCTGGGTGCATGGGGACGAGTCATTAGTGTCATCTGAGGTCAACTCACATGGCAATTTCTGGCCTTACCACTGGCATGTATGTCCAGTTAGCTGGTGGGCAGGGAAAAGCATGACTGACCACTTATATCCACAATTACCGAGACAGACTGCGCTTGGACGAGTATGCCAAGGCATAAACGCCTCTGAACTTTCCAACCAAAGCACCAATAAGCAAATTCACACCATCCACAAGTCCACTCCCACCCAGGACCAAAGCCAGGGAGAGAGCAAGAGAAATTAAACCAAATTTATCAAATAGGAATCCATTTGTTCTCTTTCACAGCGGCCTTCCAGTCACAGCTGTGAGTCATTGTGCGCAACACTGCAAAAGAGAAATGGCTTTTTTTTCTTTGAGCATTTTCTTGGCTCTAACAGCAAGACTCTGTAATTGCAGTAAGTTAGGATCATTTCTCTGTAACAACACTCAGTCACTGTGTTTAGAGCAGGACATGGGCAGCTCCGGGTACATTTAAATGGCTGTAATTAATAATTCTCCAGAGAGTGGGCAAATTCACTTCTAATCACTAAGTTTCTTTGCCAGCCGCTGCCCAGCATCCCTCCAAAAATGAGCTTTACCAAAGCGCCAGCTTCAGACTCGCTCTCCATTTTGTAACTCAATTCCAACTCCAGTGACACACAGTCCAAAATGGTATTTTGAGATACCCATACTGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252390 lncRNA downstream 78777 8007911 ~ 8008161 (-) True G222526
TU252388 lncRNA downstream 87265 7999442 ~ 7999673 (-) True G222524
TU252383 lncRNA downstream 127597 7959105 ~ 7959341 (-) True G222519
TU252366 lncRNA downstream 206098 7880640 ~ 7880840 (-) True G222502
TU252105 lncRNA downstream 219695 7819602 ~ 7867243 (-) True G222289
TU252499 lncRNA upstream 105280 8216875 ~ 8217121 (-) True G222625
TU252500 lncRNA upstream 106695 8218290 ~ 8218525 (-) True G222626
TU252510 lncRNA upstream 116617 8228212 ~ 8228511 (-) True G222636
TU252511 lncRNA upstream 118250 8229845 ~ 8230068 (-) True G222637
TU252515 lncRNA upstream 120312 8231907 ~ 8232281 (-) True G222641
CI01000051_07836858_07853522.mRNA mRNA downstream 232827 7836825 ~ 7854111 (-) True CI01000051_07836858_07853522
CI01000051_07618053_07621854.mRNA mRNA downstream 465084 7618042 ~ 7621854 (-) True CI01000051_07618053_07621854
CI01000051_07584669_07585335.mRNA mRNA downstream 501603 7584355 ~ 7585335 (-) True CI01000051_07584669_07585335
CI01000051_07580256_07582183.mRNA mRNA downstream 504755 7580241 ~ 7582183 (-) True CI01000051_07580256_07582183
CI01000051_07410144_07439528.mRNA mRNA downstream 647410 7409463 ~ 7439528 (-) True CI01000051_07410144_07439528
CI01000051_08247858_08254018.mRNA mRNA upstream 136048 8247643 ~ 8254266 (-) False CI01000051_08247858_08254018
CI01000051_08346268_08346909.mRNA mRNA upstream 234551 8346146 ~ 8347058 (-) True CI01000051_08346268_08346909
CI01000051_08354973_08355986.mRNA mRNA upstream 243330 8354925 ~ 8356034 (-) True CI01000051_08354973_08355986
CI01000051_08401449_08401739.mRNA mRNA upstream 289618 8401213 ~ 8401786 (-) True CI01000051_08401449_08401739
TU251621 other downstream 1953359 6132773 ~ 6133579 (-) True G221840
TU251315 other downstream 2568114 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 3928835 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 5125444 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 5246306 2840270 ~ 2840632 (-) True G218861
TU252631 other upstream 230554 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 231375 8342970 ~ 8343438 (-) True G222730

Expression Profile