RNA id: CI01000051_08381644_08388611.mRNA


Basic Information

Item Value
RNA id CI01000051_08381644_08388611.mRNA
length 2526
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000051_08381644_08388611
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8381591 ~ 8389116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAATGCACTGGCTTTTAAAGAAAGTAGCCAACAAGTTTAAGATTTAAATATGGCATCCGTTGAAGAATTTGCTAAAGCTCCATCAGAGGACGTGTTGAATTTGTTCGTGAAGCAACAGTTGTGGGAACTTGTAGAGCATTTTAAAATTAGTGATGTAGATAAACGAATAAAGAAAAATGAACTTTGTTCTATTGTGAGAAATTGGTTAATTGAAAACAATCTTTTAATCGTTTCCGCACAGGAAAAACACGAGGTTGAGAGAAATCCGGTGGATATTTTTTCAGGGTTATCTTTTGAACAGAAAAAAGAAATTTTGCAAATGCAACAGAATCATGATAAAGAATTGGTCAAGGAAACTAAGCGATATGAGTTTGAGATTGAAAAATTAAGAACAGATAACTTAATCAAACAACGCGAAATCGAATTCGCACAGAAACAATTAGATGCTGAAAAATCATCACGCGAGTTTGAGCTGCAAGCGGAGCGTTTAAAATTGGGAAAGGAAGGTAAACTATCTCCAGAGCATGGTGAGAGAAATTTTAATTTATCTGGTGGTTTCGACTTGGCCAGTAACTTAAGATTGCTCCCTAAATTTAACAAACATGACCCTGATGTGTTTTTCTCTTTGTTCGAGACTATTGCTGAAGAAGGGAATTGGCCAAATGCTGTCCGAATTGTTATGCTCCAAACTGTGATTACAGGCAAGTCACAGGAGGCATATGCAGCGCTTCCAATGGAGGATTGGAGAGATTATTATAAGGTCGAAGTGACAATCCTAAAAGCTTACGAGTTAGTTCCTGCGGCATACCGCCAGCGTTTTAGGAACTGGAGAAAAGGTGACCGCCAAACACATTCTGAGGTGATAAGAGAACTTGTTTCGCATTTTGATTGTTGGTGCATTGCTTCCAATGTTGATAACTTTGAGAATTTACGTGATCTTATTATATTAGAACAATTTCAGAACATTGTGCCTGACTATATTGCTACATATATAAATGAAAAGAAGCCACATGATGTGGTTGAAGCTGCATTTTTAGCAGATGATTACATTTTGACGCATAAAACTGCATACAGAGATGACCGATCAGGGCGTCACTATAGTAACTTAACTGAAAATAGAGTTGCATCAAGGAAATTTGAACCAACTTTTTCTTCAAAATTTGAGAAAAATGGTCGTGGGAAACCTGACCGAGATTTAGTATGCAATTACTGTTTCAACATTGGACATTGGCAAAATAAGTGTCCTGTTTTGGCTGCAAAGTTGAAGTCTAGTCAAAAGAAGTCAAATGCTAATGTTAGTCCTGTATTAATGACTGAGACTTCAAAAGTCCGTCCATCATTGCCAGTGGATGGTGTCATGGCAACTCGGTACCCGGCAGCTTGTCCTATCAGGAAAATTACCACTAAAGCAGTTGTGAAAGCTCTAACCCAATTCATCTCGATTTTTGGGATACCCAAGATTATTCAGAGTGACAAAGGGACTAATTTCACTTCACATGTGCCAACTCGTACACATCTGATCCAGCATGATGTGGATGTAGGAGATGCGCATCCCATTCGTCAGCGTTTTTATAGGGTTCCTATCAGCACGAGGAAAGTGTTGGAGTCTAAAGTTCAGTATATGCTGGAGAATGAGATCGCTGTTCCTTCTTGCGCTAGTTGGGCTTCACCATGTTTGCTGGTGAAGAAGCCAGATTCTACTTACAGATTTTGTACTGATTACCGTAAGTTAAACGCCATTACTAAACCTGACACGTTTCCACTTCCTCGAATGGAGGATTGTGTGGATCAGATGGCTACTGCAAATTTTGCAGAGGTGTGTGAGTTTGCCAAGGCGACGGTAAGATATTTGGGCAAAGAAGTTGGACAAGGTAAGGTGAGACTGGACTTGATCACCCTGATCCAGATTGCTGGGGGTAAGGGGAGTAGTCAAGGAGAATTGAGATATCATGTTCTTACAGTTTGTATTGGTGGATCGGATGCTATGGGGAGGAAAAAAAAAAGAATAATAGAATAAAAGGAAAGGATGCTTTTAAATTTTTCACTTTTTGGTTTTGTTCTGTGGTGTCGTGAGGATTCTTTTCATGGGATACAGGATCTTTTAAAGGGGGGTGTGTGACGTCTCAGTGAGTCACGTTGTGTTTCTATCTGAGCTACAGGTGATTGGCAGACTGCCGGTGATTGGCTGACGTAGTGTTGCACCTGCACGAAATCAATGCTCTTTCAAAAATCAGTTCGAACTGATGGCGGGAGGAGAATTGGTGCTTGTTGGCGTTTGTTGTCTGTATGTCACGAGGCTGCCGGTGTTCTCGAGGGATATGGAGGTTGCGGGAGACCCCCGCCGCACTCGAGGAGTTTTCGTTCTGATCCGCCTTCCCTAGAATGGATTTTGGACTTTAATCTTCCGTTGGTTGTGTTTGTTTGAACTGGTTACACTTGTAACACTTACATGCACACGCTGACACACTGACTATTCATCTATACTGAGTACTAAACATTTCATGTTTATTTTCTTTAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252654 lncRNA upstream 21098 8360132 ~ 8360493 (+) False G222745
TU252653 lncRNA upstream 21098 8360209 ~ 8360493 (+) True G222745
TU252652 lncRNA upstream 21985 8359158 ~ 8359606 (+) False G222744
TU252651 lncRNA upstream 21985 8359294 ~ 8359606 (+) True G222744
TU252640 lncRNA upstream 35914 8345451 ~ 8345677 (+) True G222733
TU252676 lncRNA downstream 1212 8390328 ~ 8390594 (+) True G222765
CI01000051_08211233_08214513.mRNA mRNA upstream 166895 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08171018_08172280.mRNA mRNA upstream 209047 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08046197_08069874.mRNA mRNA upstream 311674 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_07978982_07979269.mRNA mRNA upstream 402288 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
CI01000051_07963621_07976671.mRNA mRNA upstream 403382 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_08425890_08429863.mRNA mRNA downstream 35581 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU252626 other upstream 38143 8342942 ~ 8343448 (+) True G222727
TU251044 other upstream 167320 8105643 ~ 8128075 (+) True G221324
TU251108 other upstream 968584 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 1039045 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1548523 6825799 ~ 6833068 (+) True G221187

Expression Profile