RNA id: CI01000051_08425890_08429863.mRNA


Basic Information

Item Value
RNA id CI01000051_08425890_08429863.mRNA
length 2330
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000051_08425890_08429863
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8424697 ~ 8429965 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAATAAGAGCCGATTCCAGGGTTTCTGCACTCACATAGCACGAGTAAAGAAGTGGTTGAATATTAGAATTCATAGAAGTGATACCTGAGGGGGGGTGAGAAGCCTTGGAAGATGATTGTAGTCAAAAGTGCTGAGTCACCGCCTGCTGGGTTTGCTGAGAAACTGTCAAAGCTGTTATTACAAGAAGGAAAGTCCTTTTCAGGTACTGTTCCTACTCCAAAAGTGGAAGAGGCCTTGGAGAGTTTGATGGATCAAGCCAGAATGATGGTCATATAGTGTAAATGCTCAGAGAAAGAGAAGCGTTGATGCATCATTGAGAGCTTAACGGGTTCAGCCCTGGATGTTGTGAAGGCTGTCCGATTTTCTAGCAAAGATGCAACTTCCCTTCACTATCTTGAGGCTTTGGAGGGTGCTTCTGGAACTCCTGAATCAGAAGAAGAAATACATTTTGCTTTCAGATTATTGAGGCAGAATCCTGGTGAAACTCTTTCTGATTTCTTGAAGAGAATGGAGAAATCTCTCACCAAAGTAGCGCAAAAAAGTGGGTTACCCTGGGAAAATGTGGACCGAACAAGAGTTGAGCAGCTAATTCGGGGAGCTGTTGAATCAGACTTGCTGTTGGTCCAGCTGAGATTGAGAGAGAGACAAGAAAATCCACCTACTTTTCTAGCTCTCCTAAATGAGATAAGGGAGGCTGAAGAAAGCTAAGCTGCCAGACATAGTCTGGGTGTCACTGAAAAGCCTGTCACCCAGCCACGACAGAAACAGACTGGTTTAGTTGTGGTGGGAGAATTGAAAGCTGAGATTCAAGAGCTGTGGACAAAGGTAAAGTACCTGTGTCAGAGGTGATGGTGGAGTCAAAGGCTGTACCAAGTAGAAGAGGAGGTTACACACCAGCAGGTTACACACCATCTCGGAAGTACGCTCACTAAGGAGGCAGGTACAAAGACTAGAAGAGCAGTTGGCTTCACTGAGTGCCAGACAATCGTCACAGTCAACAAGAGAACCACAACAACTGGAGCAGGCTGATACTTCTGTGAAACCCAGACTTGAAAAGACTAAAGAAGATTACTTCTGTTACAAATGTGGGGAAGATGGCCACATTGCTCTGAAGTGCAAAGCTCCTGAGAATTACAGTCTGGTGATACAAAAGCTTGTGTGATCATTACGAAAAACCAGAAACGAAAGAATGGATCCGAGTAGTAGTAAACACACTGGTGATAAAGCCAGCTTCTCCCGGAAAAGCCAGACAGTTGTGGTTAAGAAGAGTGGTCTTCCTGTAGGGTTGGTGGGTCCAGCTCTGACAATCACTATGAAGATCAATGGGCAGCCCTGTGAAGCCTTTCTAGATAGTAGATCTCAGGTCACTATCATCTTTGAGTCATGCACAGCGAGTTATCCCTGCAAGGGATATGTCTTGGTAAATATTTCCTTTCCTGCTTCTGTCATGGGTGTGGAAGAGACTGTTTCCATTCTTGCGTTGGTTTGTCCTGAACCCAAGGGTCCTGAAAAAGTGCCTGTAATCATTGGGACTAATGCAAGTTTTTTCCAACGTTTGATTGGACTTAGCACAGCTGTTGTACTGCCCTCTTCTGCTGTGGAGAAGAACAAATGCAAATTCCTGACGAGACGTGCAAAGATAACCATCCCAGCTGGAACAATCGTTGCTCATGTGTTTCCTACAGATACAGTGACTGTAGCATATGATACCCCAACAAAATTCAAGAGCATCCAAAGCTGTTTGGTTTCAGCAAGTCCACCATTCCAAAAGAGTGGGAAGATCGCCCCCACCAGAAATTGTCTGAGAGAGGACATCGCTGGCTGGCAGCACCGGCCATGTATGATTTCAGTCTTCAATATAAGCCAGGATATCATAACACAGACGCTGATGCGTTGTCTCGTTATCCTTTGGATGTTGGCTCAAGATAAAGATCCAGTCATTGGACTGGTGAAGCTTGCTGTGGAGCAGGGGAAGGTACTTACAACTGGTGCAAGTTCTAACCCACAAATGACGCTATTGCAGAGGCAAGGTCCCAAGTTGGTCATCCATAATAAGCTACCGTACAGAGTGTTCAACAGTCCCTGTGGTAAAGAGAAAAACCAGCTTGTTTTACCTGAACAGTTTCATCAGCAAGTAATGCATTCCTTACATGATGATGCAGGACATCTGGGAATCGAGCACACTTCTGAAGGACTGATTTTAATAGCCACAAATGACTTCTGAGATTGAGAAGTATGTCAAAAATTGTGGAAGATGCATAGCCAGAAAGACATTGCCTCAGAAACGTGCTCCTCCTAGTAACATCACAAGTAGTGGGGCAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252676 lncRNA upstream 34103 8390328 ~ 8390594 (+) True G222765
TU252654 lncRNA upstream 64204 8360132 ~ 8360493 (+) False G222745
TU252653 lncRNA upstream 64204 8360209 ~ 8360493 (+) True G222745
TU252652 lncRNA upstream 65091 8359158 ~ 8359606 (+) False G222744
TU252651 lncRNA upstream 65091 8359294 ~ 8359606 (+) True G222744
CI01000051_08381644_08388611.mRNA mRNA upstream 35581 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08211233_08214513.mRNA mRNA upstream 210001 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08171018_08172280.mRNA mRNA upstream 252153 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08046197_08069874.mRNA mRNA upstream 354780 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_07978982_07979269.mRNA mRNA upstream 445394 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
TU252626 other upstream 81249 8342942 ~ 8343448 (+) True G222727
TU251044 other upstream 210426 8105643 ~ 8128075 (+) True G221324
TU251108 other upstream 1011690 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 1082151 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1591629 6825799 ~ 6833068 (+) True G221187

Expression Profile