RNA id: TU246672


Basic Information

Item Value
RNA id TU246672
length 267
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G217430
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 128614 ~ 128880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACCTGTGCTATTTTTTTTAGGATTCACTGATGAATGAAAAAGTTAAAAAGAACTGAATTTATTCAAAATAGAAATCTTTTCTAACAACATACACTGTCCGTTCCAAAGTTACTGAAAAAATTACTGGGGACAGCATATTTTTTTCCTTTTTTTTCTGAAAGAAATGAATACTTTTATTCAGCAAAGATGTGCTAAATTGATAAAAAAAAAATGATAGTAAAGATTTATATTGTTAGAAAAGATTTCTATTTTGAATAAATACTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246644 lncRNA downstream 30906 80788 ~ 97708 (-) False G217410
TU246645 lncRNA downstream 30906 80788 ~ 97708 (-) True G217410
TU246668 lncRNA downstream 51327 73998 ~ 77287 (-) True G217426
TU246696 lncRNA downstream 57094 70343 ~ 71520 (-) True G217453
TU246631 lncRNA downstream 109252 18604 ~ 19362 (-) True G217399
TU246646 lncRNA upstream 232 129112 ~ 129592 (-) True G217411
TU246659 lncRNA upstream 1506 130386 ~ 131468 (-) False CI01000051_00131867_00138611
TU246660 lncRNA upstream 1715 130595 ~ 131468 (-) True CI01000051_00131867_00138611
TU246711 lncRNA upstream 12625 141505 ~ 141743 (-) True G217468
TU246667 lncRNA upstream 29077 157957 ~ 160923 (-) True G217425
CI01000051_00083434_00086769.mRNA mRNA downstream 41255 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 71563 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 126075 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00131867_00138611.mRNA mRNA upstream 1692 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00224709_00227613.mRNA mRNA upstream 95627 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 133561 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 149312 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 205173 334053 ~ 337197 (-) True CI01000051_00334616_00337009
TU246734 other upstream 96911 242582 ~ 243026 (-) True G217491
TU246796 other upstream 153315 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 266351 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 271796 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 433316 567040 ~ 567155 (-) True G217528

Expression Profile