RNA id: TCONS_00016093


Basic Information

Item Value
RNA id TCONS_00016093
length 244
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_008184
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 51903159 ~ 51903638 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACATTTATTGCTGAGTCCAAAATAAATTAACTGATCAAATTTTACATCAGTAATATCACTATATGTTCATTCAATTTTCTGACATTAACATTTCTAATATGTTCAACAGATTGCTCTCACCATTCAAGCTCATGTAAGGtcaataatGAGAACAGAAGCATAACCACAACCCCCCCTGTAGCCAACCTTTCTGCAAAAACTGGACTACTTTCACTCAACCAGcAAGTTGAAGACAAGTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0042559 pteridine-containing compound biosynthetic process biological_process
GO:0034312 diol biosynthetic process biological_process
GO:0046146 tetrahydrobiopterin metabolic process biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060047 heart contraction biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016532 lncRNA downstream 65772 51826078 ~ 51837387 (-) True XLOC_008182
TCONS_00016092 lncRNA downstream 283701 51611220 ~ 51619458 (-) True XLOC_008179
TCONS_00016531 lncRNA downstream 916553 50972410 ~ 50986606 (-) False XLOC_008176
TCONS_00016530 lncRNA downstream 916553 50972410 ~ 50986606 (-) True XLOC_008176
TCONS_00016529 lncRNA downstream 916572 50972410 ~ 50986587 (-) False XLOC_008176
TCONS_00016094 lncRNA upstream 286239 52189877 ~ 52191692 (-) True XLOC_008186
TCONS_00016533 lncRNA upstream 494595 52398233 ~ 52408817 (-) False XLOC_008187
TCONS_00016534 lncRNA upstream 672325 52575963 ~ 52576704 (-) True XLOC_008192
TCONS_00015924 mRNA downstream 48112 51829317 ~ 51855047 (-) True XLOC_008183
TCONS_00015921 mRNA downstream 283771 51164056 ~ 51619388 (-) False XLOC_008179
TCONS_00015920 mRNA downstream 863457 51023954 ~ 51039702 (-) True XLOC_008178
TCONS_00015919 mRNA downstream 888867 50994138 ~ 51014292 (-) True XLOC_008177
TCONS_00015918 mRNA downstream 1010717 50839282 ~ 50892442 (-) True XLOC_008175
TCONS_00015926 mRNA upstream 473919 52377557 ~ 52408307 (-) False XLOC_008187
TCONS_00015927 mRNA upstream 491788 52395426 ~ 52408385 (-) False XLOC_008187
TCONS_00015929 mRNA upstream 496139 52399777 ~ 52408396 (-) False XLOC_008187
TCONS_00015931 mRNA upstream 514609 52418247 ~ 52433292 (-) True XLOC_008188
TCONS_00015932 mRNA upstream 572882 52476520 ~ 52480661 (-) False XLOC_008189
TCONS_00015923 other downstream 149962 51753080 ~ 51753197 (-) True XLOC_008181
TCONS_00015922 other downstream 629859 51273185 ~ 51273300 (-) True XLOC_008180
TCONS_00015911 other downstream 2148209 49754834 ~ 49754950 (-) True XLOC_008166
TCONS_00015906 other downstream 2853271 49040191 ~ 49049888 (-) True XLOC_008156
TCONS_00015898 other downstream 3326459 48576584 ~ 48576700 (-) True XLOC_008146
TCONS_00015925 other upstream 145520 52049158 ~ 52049274 (-) True XLOC_008185
TCONS_00015928 other upstream 494595 52398233 ~ 52405708 (-) False XLOC_008187
TCONS_00015930 other upstream 502117 52405755 ~ 52408817 (-) True XLOC_008187
TCONS_00015933 other upstream 573043 52476681 ~ 52478944 (-) True XLOC_008189

Expression Profile

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