RNA id: TU246667


Basic Information

Item Value
RNA id TU246667
length 2857
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G217425
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 157957 ~ 160923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTCTATTATCCCTACATTATTGTATCAGCCATTTAGCCATTATCTGGCACAAAAACAACAAGAATCTCAGTACTAAATTGAACAGCTAAATTTACATGAATTTCAACTAATACAGCTACAAAAAAAATCTATATCTGAGTTGAAACATGGTTAACAGAGGCACTGTTTTACTGCAGCTGAGCTCCTCTCAGACTACTGAACATCTATTTAATTTAGCAGCGGCTCAACTTTTAATTTGTTAACTGGACTTACAATTGGCCAGATCTTCCAGCTGTATGTTCCGTACTTCGGGAGGTTCAGTTTGTGGCCGGCACCAGCCATTACGGCACAACGACATGGGCACGACCCCGTAGACATACGTCAACATGAGAGGCACCCCCACACCTTGAAACACAGGAGATTTACTCAATTAGAATTGATTATGAAGCTATTCCAAAAGAGTATTATTATTAATTACAGAAAATGTTGTATAAGTGTACAAGTCCCTACTGTGTGCAAACGAATACATCAAATCACAGACATATTTACCTCAAAAGTGAACTTATTTTCAGATGAATCTGAAGGAAAAGGGCAGTAATTCACATAATGGCAGCGTAAATACACAGAAGCATAATGCTAGCAGCAAAGACAAGGACAACACGCAATAAAGGAGACAAAAGGCCATGATCCTCCCGTTCTGCATGAGAACAGTGTGGCATTGTTGACGGGGACATTGTAGGGGACAAGGCCCCACTGTGGCTCTCCTGAAGAGAGGTCAGAGCTGCAGAACAGACAGGGCTATTCAGAGGGGAGAATGAGAGGGAACACAGGCTCTGGGCTTGCGAGGAGAGCACAGAGTGGTGAATGTGCTGCGCTCAGGTCTTCACGCTACGCCATGGAGATCGCTCTGACATTTTAGTTGCAGCCGGCTGCTGTAATCTTCCCCTCCCCGCTCCAACTCTCACAGGAGTGCCAAAGCAGAAGATAGATGAGTCATCAGAGACGACCGGGGCAGTTGCTGTGTGTGTGTGTGTGTACGTGTATGAATGAAACAGCTGCATGCACATATGTAGGCTAAAATGTGCGCAATATGGGTGTTAAAGGATTAGTTCACCTACCCCCCACTCAAAAAAAAGGTTATTTTCCCTGAAGTCATTCCAAAGCTATATGATATTCTTGCTTTTGTAAAACACAAAATGAGAAATCTTTGATAATGTGCCAGTTGCTCTTTTCTATGGAAGCTTGTTTCCGCCACTGAATAAAATATAAAAAAGATATAAATTGCGAGTTTACATGTCGCAATTCTGACTTTTTTTTTGCAGAATTGTGTGATATAAAGTCGCAAATGCAAGTTATAAAGTCAGAATTGCAAGATATAAAGTCGCAAATGCAAGTTATAAAGTCAGAATTGCAAGATATAGTCGCAAATGCGAGTTATAAAGTCAGAATTGAGTTAAAGTCAGAATTGTGCGTTATAAAGTCAAAATTGCGTGATATAAAGTCGCAAATGCGAGTTATAAAGTCAGAATTGCAAGTTTATAATGTGCAATTGTATTTATAACTCACAATTCTGACTATTTCTCACAATTTTGAGTTTATATCTTGCAATTCTGACATTATAACTCGCAATTCTGCCTTTATTTCTTGCAATTGTGAGTTTATAACACGCAATTTTGAGTTTATATCTCGCAATTCTGACATTATAACTCACAATTTTGACTTTATTTCTCACAATTAAGTTTATATCTCGCAATTTTGAGAAAAGAAGGCAGAATTGCGAGATGTAAACATAAAAGTAGTCTTCCAGAGTCATGCAATATCTTTGCAAGATGAACAGATTATACATAAGTTGTTATTCACCTAAATCAACTGATTTACTGAAAAGATCTGGTTCAAAAGAACTACTCACAATGTTTCAGTAAATAATGGCTTCGATTTCAGTCTGTTTTTGGTTTTGATTTCAAAGAATGGCCAGGATGTTCTTCAATTCCCCTTTTGGGCTCCACAGAAGAAAGTCGAACAGGTTTGGAATGACATTAAATGATTTTTAGTTGAACTATCCCTTTAAACGTGTTTGTTTTCATTTCTGACTTTCTTATTCAAGGTCTCAGCTGAGAGGCAGACTTGTGTGTCTTAAAGGTGCAGTAAGCGATTTCTGAGAAACGCTGTTGAAAGTGGATCAGACCGAGCGCTACAACAAACTTGTAGCCAATCAGCAGTAGGGGGTGTGTCCACTCATGATGGGGAAGGAGAGAGAGTGAGCAAGAGGGAGATTTTAAGAAAGACTGTAGAAAGAGCTGTGGCTGAGAGACATTAGAAAAAGTCAGAGGTATATCACTGGAAAAAAAGGGTTATGATCAGGCTAGAGCTTTAAGACCTGCATTAATATTAGAAAAGCTTTCCAGTGCTGGAGAGACCTAAGCGAGAAGGCCTGAAAACAGACGCCAAGGTCCTTTCTGCTCCAGACGTGAGTAACATTGGTTTTGAGTGTGTGCTGCTGCCGACTAACAACCAGCTCTTGCTTGTATATACTCTTCTGTACTGTGTTTATTTTTTGTCACTTGTCATCTTCACTTTATTGTTTGCGAAGCTTTATTTTGCTTTGCTTCTGCTATGATAAAGAGATATCCACTCTAACAGTTTGGGGGCGGAGCAATGAAGGGAGGGGTGTGTTTGTTTGGGTTGATTTCAAATATCAACAGTGTTCAACAGTGATTCTCTGAAATCACTTACTGCACCTTTAACTAGCTTCATTTGTCTGAACTCATGGCAGAACAATCAATACAAAGAAATAACACTTACGTCAGCACCTTTACATCGCTGTAACCCAACTATACGACCACTAAAGTGCTTGTTGCCTTCTTAATATCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246711 lncRNA downstream 16214 141505 ~ 141743 (-) True G217468
TU246659 lncRNA downstream 26489 130386 ~ 131468 (-) False CI01000051_00131867_00138611
TU246660 lncRNA downstream 26489 130595 ~ 131468 (-) True CI01000051_00131867_00138611
TU246646 lncRNA downstream 28365 129112 ~ 129592 (-) True G217411
TU246672 lncRNA downstream 29077 128614 ~ 128880 (-) True G217430
TU246716 lncRNA upstream 6263 167186 ~ 167430 (-) True G217473
TU246669 lncRNA upstream 9560 170483 ~ 170754 (-) True G217427
TU246718 lncRNA upstream 10339 171262 ~ 171494 (-) True G217475
TU246719 lncRNA upstream 13696 174619 ~ 174853 (-) True G217476
TU246722 lncRNA upstream 21089 182012 ~ 182573 (-) True G217479
CI01000051_00131867_00138611.mRNA mRNA downstream 19167 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 70598 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 100906 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 155418 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 63584 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 101518 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 117269 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 173130 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 185904 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 64868 242582 ~ 243026 (-) True G217491
TU246796 other upstream 121272 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 234308 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 239753 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 401273 567040 ~ 567155 (-) True G217528

Expression Profile