RNA id: TU246307


Basic Information

Item Value
RNA id TU246307
length 248
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G217110
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 171478 ~ 171725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGAACTGTGTTCCAGGAATACAGCTGGAGGAAAGCCGTCTGTCTCTTGCTGCTGAGAGAATGTATATTTGCTAAAAACCCAAGAAAATTAGCAAAATTAATTATTAAAGTCAACAACTGTGTCTTGGGAATTTAGATGTGCCCTCCCCGAATTAAATTTTAATGATTTGATCTGTAATGGCTGTCTGTCTCTGTATTTCAGAGACAGAGCGAGCAAGTGGACAAGGTTTAATTGTTGCTTGAGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246282 lncRNA upstream 40016 130590 ~ 131462 (+) True G217093
TU246265 lncRNA upstream 41887 129044 ~ 129591 (+) False G217082
TU246266 lncRNA upstream 41887 129115 ~ 129591 (+) True G217082
TU246257 lncRNA upstream 87974 73847 ~ 83504 (+) False G217077
TU246256 lncRNA upstream 88803 73814 ~ 82675 (+) False G217077
TU246308 lncRNA downstream 1095 172820 ~ 173271 (+) True G217111
TU246309 lncRNA downstream 1783 173508 ~ 173776 (+) True G217112
TU246310 lncRNA downstream 2728 174453 ~ 174759 (+) True G217113
TU246311 lncRNA downstream 3065 174790 ~ 175275 (+) True G217114
TU246312 lncRNA downstream 3774 175499 ~ 176079 (+) True G217115
CI01000051_00147585_00164301.mRNA mRNA upstream 6429 147585 ~ 165049 (+) True CI01000051_00147585_00164301
CI01000051_00094391_00124007.mRNA mRNA upstream 47318 94391 ~ 124160 (+) True CI01000051_00094391_00124007
CI01000051_00074000_00080983.mRNA mRNA upstream 90416 74000 ~ 81062 (+) True CI01000051_00074000_00080983
CI01000051_00017447_00029701.mRNA mRNA upstream 141677 17447 ~ 29801 (+) True CI01000051_00017447_00029701
CI01000051_00194573_00205676.mRNA mRNA downstream 22102 193827 ~ 205735 (+) True CI01000051_00194573_00205676
CI01000051_00414617_00476423.mRNA mRNA downstream 242892 414617 ~ 476423 (+) True CI01000051_00414617_00476423
CI01000051_00487642_00497395.mRNA mRNA downstream 315917 487642 ~ 498310 (+) True CI01000051_00487642_00497395
CI01000051_00514656_00517593.mRNA mRNA downstream 342090 513815 ~ 518014 (+) True CI01000051_00514656_00517593
CI01000051_00638200_00720543.mRNA mRNA downstream 466475 638200 ~ 720543 (+) False CI01000051_00638200_00720543
TU246252 other downstream 152740 324465 ~ 384128 (+) False G217075
TU246451 other downstream 465865 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246453 other downstream 548801 720772 ~ 724704 (+) True G217248
TU247404 other downstream 1888262 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 1888262 2059987 ~ 2065689 (+) True G218104

Expression Profile