RNA id: TU246309


Basic Information

Item Value
RNA id TU246309
length 269
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G217112
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 173508 ~ 173776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACATTAGTTGCTGTAAGTGTTAGACGCCCTTCCCGGTTTTTACACACTACAAGCGTGTGCAATTTCCTTAGTAATAACCCCTGGTTGGGAAATAACAGGTTTGATGATAGGCAACTTCCCTGTTGATCTCATGTAAACATAAAGAAAACAATTTATTTAAAAAATAATAATGCACTGGCTGTTAATACTTTACTGTTTAATCATAAATCAATACGTCAGCTGAAAGAGCTGAAAGGACTGTTGTGTCAATCCATGTTGAGGTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246308 lncRNA upstream 237 172820 ~ 173271 (+) True G217111
TU246307 lncRNA upstream 1783 171478 ~ 171725 (+) True G217110
TU246282 lncRNA upstream 42046 130590 ~ 131462 (+) True G217093
TU246265 lncRNA upstream 43917 129044 ~ 129591 (+) False G217082
TU246266 lncRNA upstream 43917 129115 ~ 129591 (+) True G217082
TU246310 lncRNA downstream 677 174453 ~ 174759 (+) True G217113
TU246311 lncRNA downstream 1014 174790 ~ 175275 (+) True G217114
TU246312 lncRNA downstream 1723 175499 ~ 176079 (+) True G217115
TU246313 lncRNA downstream 2575 176351 ~ 177020 (+) True G217116
TU246314 lncRNA downstream 3364 177140 ~ 177622 (+) True G217117
CI01000051_00147585_00164301.mRNA mRNA upstream 8459 147585 ~ 165049 (+) True CI01000051_00147585_00164301
CI01000051_00094391_00124007.mRNA mRNA upstream 49348 94391 ~ 124160 (+) True CI01000051_00094391_00124007
CI01000051_00074000_00080983.mRNA mRNA upstream 92446 74000 ~ 81062 (+) True CI01000051_00074000_00080983
CI01000051_00017447_00029701.mRNA mRNA upstream 143707 17447 ~ 29801 (+) True CI01000051_00017447_00029701
CI01000051_00194573_00205676.mRNA mRNA downstream 20051 193827 ~ 205735 (+) True CI01000051_00194573_00205676
CI01000051_00414617_00476423.mRNA mRNA downstream 240841 414617 ~ 476423 (+) True CI01000051_00414617_00476423
CI01000051_00487642_00497395.mRNA mRNA downstream 313866 487642 ~ 498310 (+) True CI01000051_00487642_00497395
CI01000051_00514656_00517593.mRNA mRNA downstream 340039 513815 ~ 518014 (+) True CI01000051_00514656_00517593
CI01000051_00638200_00720543.mRNA mRNA downstream 464424 638200 ~ 720543 (+) False CI01000051_00638200_00720543
TU246252 other downstream 150689 324465 ~ 384128 (+) False G217075
TU246451 other downstream 463814 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246453 other downstream 546750 720772 ~ 724704 (+) True G217248
TU247404 other downstream 1886211 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 1886211 2059987 ~ 2065689 (+) True G218104

Expression Profile