RNA id: TU246312


Basic Information

Item Value
RNA id TU246312
length 581
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G217115
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 175499 ~ 176079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTATGTTAAAGTCACCATGAAACCAAAATTTAATTCTTATTTTTTAATGTTATAATATTACAGTACTTATCATAAATGATTTATCTGTGCATATCATTATTTTTAATTCATGTGCCCTCATGATCTTTAATCAAAATATCTTCCTCTCTCACTTGTAATGACTTCTCTGATGATGTGCTTACTGGCATGAGGGCGGGGCAACCTGTCACTCACGTGACATCACAGCAATAGCAAACAACAACCATCCTATCAATTCATGATGAAATCAAGCCCCGCCCTACATTTGTTCTTGTTCGAGAAGCCGTTTCACTCGGATATGCGTCACAATAGGGAAGAAAACATTATCACCAATTTAATTATCAAATGTTCTTGCAGATCTTCATTAGCTGGTTCAGTTGTCTTAATTTGAAGGTTCCAGCCTTCGTTGCACATCCTTGGCCCTGTTTCCACCTTTTTATTAAGATGCATTTTGGTTGATTGGACCACAAGTGGACGATGCTAAATACAGGTGTAAATAGGGTATAAAATGTTTTGAGCTTGTCCACTTCCGACCTCTTTCAGAGGTAGTTGAAAGCGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246311 lncRNA upstream 224 174790 ~ 175275 (+) True G217114
TU246310 lncRNA upstream 740 174453 ~ 174759 (+) True G217113
TU246309 lncRNA upstream 1723 173508 ~ 173776 (+) True G217112
TU246308 lncRNA upstream 2228 172820 ~ 173271 (+) True G217111
TU246307 lncRNA upstream 3774 171478 ~ 171725 (+) True G217110
TU246313 lncRNA downstream 272 176351 ~ 177020 (+) True G217116
TU246314 lncRNA downstream 1061 177140 ~ 177622 (+) True G217117
TU246315 lncRNA downstream 2171 178250 ~ 181283 (+) True G217118
TU246280 lncRNA downstream 35793 211872 ~ 213397 (+) True G217091
TU246284 lncRNA downstream 37537 213616 ~ 213862 (+) True G217095
CI01000051_00147585_00164301.mRNA mRNA upstream 10450 147585 ~ 165049 (+) True CI01000051_00147585_00164301
CI01000051_00094391_00124007.mRNA mRNA upstream 51339 94391 ~ 124160 (+) True CI01000051_00094391_00124007
CI01000051_00074000_00080983.mRNA mRNA upstream 94437 74000 ~ 81062 (+) True CI01000051_00074000_00080983
CI01000051_00017447_00029701.mRNA mRNA upstream 145698 17447 ~ 29801 (+) True CI01000051_00017447_00029701
CI01000051_00194573_00205676.mRNA mRNA downstream 17748 193827 ~ 205735 (+) True CI01000051_00194573_00205676
CI01000051_00414617_00476423.mRNA mRNA downstream 238538 414617 ~ 476423 (+) True CI01000051_00414617_00476423
CI01000051_00487642_00497395.mRNA mRNA downstream 311563 487642 ~ 498310 (+) True CI01000051_00487642_00497395
CI01000051_00514656_00517593.mRNA mRNA downstream 337736 513815 ~ 518014 (+) True CI01000051_00514656_00517593
CI01000051_00638200_00720543.mRNA mRNA downstream 462121 638200 ~ 720543 (+) False CI01000051_00638200_00720543
TU246252 other downstream 148386 324465 ~ 384128 (+) False G217075
TU246451 other downstream 461511 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246453 other downstream 544447 720772 ~ 724704 (+) True G217248
TU247404 other downstream 1883908 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 1883908 2059987 ~ 2065689 (+) True G218104

Expression Profile