RNA id: TU246315


Basic Information

Item Value
RNA id TU246315
length 3034
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G217118
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 178250 ~ 181283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCTTGTAACCGAGACGTTCCCATTCAGTCGGTCACGTTCGACGTACGTCGGACAGACCAACGAATAGGAATCCCTACCAAAGCACCACAGGCGCTGCCCCCTTCCAGTGCTCTGTGCAAGCCTCCTGCACCCCCTCGCCTAAAGGACGGTGGGACAGGGCTAACACAGAGAGTGTCGATCACTGCTGTTCCCAAAAATCCATTCAGTGAGACTATTGGATAACACTGGGAAAGCGTACCCTTTCACTGGGAAAGGAACGCTGCGGAAGCCCACATCCTTCCCCGAAGGAGTTATGTGGAGAAGTACATAGTCTAACCCCCGTAGGGCTGTACTACATATGGAAGTACTGGGGTGACTCCAACCTGATGAGAGGTGGGTTCTCCCAGAGGGAAAGACACAGGCTTCGTTAAGGAGCAACCGTGGAATAACACATATGGGATCTCCGTAGGGTCACACATATGGAACCCAGCCTAAACCCGGTTCTCAAGTATACAACGGAGTAAAGGCCAGCGCCAGATACTCCGCCACGTCTGGCTACCGAAGGGTAATCGGGGGACTCAACAGGGTCTGCCTTATAGGGACAGAGCAAAGCCAGGGCTGGGTCTGCCTCCTCCGGGGGCAGCGCTTGCAGGCTCACTACCTGGTCCCTGAAGGGAGTGGTAGGAACCTTGGGCACATAGCCAGGCTGGGGTCTCAGTACCATGTGGCTGTCACCCGGCCCGAACTCTAGGCACGATTCGTCGACCAAAAATGCCTGCAGGTCCCCTACCCTCTTGATGGAGGCTAATGCAACCAGCAGCAAAGTCTTCATAGACAGAAGTCTCGTCGAGAAGAGCACCACTCGACGAACAGGTTATACTTCAAGGCGTAAGCACGTCTCATAGACAGTGCATGTGCCGAAATAATGGTGTTAAGTACCTCAAGGGGGTAAGTCACATAGAACCTCCGCATCCTGTCCAGGGACCAGACATGGAGTTTCCAGAGGTCTGGTCGCGGGTGCCAAAGGGTACCCCATCTCTGAGGAAGAAGGTCTTTCCTCAGAGGAATGCGCCAGGGAGGGGCTGTCGTGAGGAGCGTGAGTTCCGGGAACCAGGTCCGGTTGGGCCAATAGGGTGCAACTAGCAGGACCTGCTCCTCGTCCTCCCTGACTTTGCACAAGGTCTGTGCAAGTAGGCTCACTGGGGGAAACGCATATTTGTGAAGGCCCCGGGGCCAGCTGTGCGCCACTGCATCTGTGCCGAGTGTTCCCTCAGACAGGGAGTAAAACAGCTGGCAGTGAGAGGTTTCTGGCAAGGCAAACAGGTCTACCTGAGCCTCTCCGAACTCTCTCCAAATCAGCTGGACCACCTGGGGTGGAGTTGCCACTCTCCCGGCAGCGCAGGTCGTGAGAGCTCGTCGGCCACACGTTTGAGCACACCAGGAACATGAATGGCGTGAAGCGACCTCAGATGCTTCTAACTCCAAAGGAGGAGATGGCGGGTGAGTTGCGACATGCGAGTTGCGACATGTGAGTTGTGACATTATTTTATGGTGTATAAAATAATAAGTGCATAAATTTGCATATTTTTATCCAGTGAGTTTCCCCTCATGACATTAAACAACACACACACCTTTGCTCTAAATTCATCTAAAAAAATAACTAGTGGTTCTTTCGTGTCTTTCTTTGAAGTTGCTTTGGTTTTTTCATTAGTCTGAACCTGCTTTATCTCTGTGAGAGCGGTCAATGATGAGGTCCTCCCAAATATTGATTTTCTTTGTTCTCCTTATGTTCACCAAATCTAAACAGCATTATACATTAGATTGCACTGGTTCTGAAGGCATACAGAAGCACTGATATTAGTTATATAAAAATATTTCCCTCCGTTGAGTCATGGAATGTGTTTGAATATAAGTGATAACATTATATTCTTATTCAATTATTTTTTTGCTAATATAACTTTTTGTTTCTCTAATTTAAATGTGCATCATTTCTCTCCCACAGTCAGCTGTAACAGCGTGTAAACAGGCAGTGTCACGTAGAGAAAGAGTTGAGTAAAGCGCACACTGAACGCATGAGAATTAGCCGTCACTTCCTCCCACAGAGAGATCCGTGTCATCCATATTTGACAACCTGGACATGCATCAGGGAAATTTGACACTCGTTCCGTCTATCTTTCTGTTTCTCATTCCGTTTCTGTCCTTCTGCTCCTCTGATAGCTCTCTTTTCCTCTGCTGATTTTAGGTACCTGTGGTTTCCAAAAAAATATTCTTTTGTTAAAAAAAACAGCCTTTTATTCTATTTTAGGCGTCCCTGCTGCCGGCGTTACCCCTGTGAACCCTGTCACTGATACTCTCTCATCGTCTGTCTGTCTGTCTGCACACGCTCTCGGTGTCTTTCATCTGTGCAGTCGGGCTCAGTGGGATTCAGACGGCTCCTGACTCCTGAAACAGGAGCTGATCACATTCATGAGCTGTCTTTTATGATTTTCAACCATATTTATGCATGCATAAGAAATATTAATAACTTATTATAGCCGTTATGGGATTGGCATTGGAGCTATAAAGCAAGACGTTCTTTACGAAACTATTTTTGTTGTAATTTACACGTCACGTTGAAAGGGAGTATTTAGAAATATGCAGTTTAGTGTTCTGCTCTTTCATTTCAGTGCCATAATTTGCCCTGTCTTATAAACAAATTATTTTTAACACTCATGTTCTCTTGAGATTGACCCCAGTGATATAAAAAGATAAGTTTTCACTGTCTATTCCCCAAAAAATCCTGGGGGAAAAAAATGTATCACTATTTTAAAAAAAATATTAAGCAGCAAAAACTGTTTTCAACATTGATAATACTCAGAAATTTTTCTTGAGCAGCAAATTATCATAGCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTACTATACAAAAAGAAAACAATTATTGTAAATTTAATGATATTTCACAATATTACTTTTTTACTATATTTTTCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246314 lncRNA upstream 628 177140 ~ 177622 (+) True G217117
TU246313 lncRNA upstream 1230 176351 ~ 177020 (+) True G217116
TU246312 lncRNA upstream 2171 175499 ~ 176079 (+) True G217115
TU246311 lncRNA upstream 2975 174790 ~ 175275 (+) True G217114
TU246310 lncRNA upstream 3491 174453 ~ 174759 (+) True G217113
TU246280 lncRNA downstream 30589 211872 ~ 213397 (+) True G217091
TU246284 lncRNA downstream 32333 213616 ~ 213862 (+) True G217095
TU246276 lncRNA downstream 32793 214076 ~ 215116 (+) False G217088
TU246275 lncRNA downstream 32808 214091 ~ 215180 (+) True G217088
TU246342 lncRNA downstream 87549 268832 ~ 269200 (+) True G217144
CI01000051_00147585_00164301.mRNA mRNA upstream 13201 147585 ~ 165049 (+) True CI01000051_00147585_00164301
CI01000051_00094391_00124007.mRNA mRNA upstream 54090 94391 ~ 124160 (+) True CI01000051_00094391_00124007
CI01000051_00074000_00080983.mRNA mRNA upstream 97188 74000 ~ 81062 (+) True CI01000051_00074000_00080983
CI01000051_00017447_00029701.mRNA mRNA upstream 148449 17447 ~ 29801 (+) True CI01000051_00017447_00029701
CI01000051_00194573_00205676.mRNA mRNA downstream 12544 193827 ~ 205735 (+) True CI01000051_00194573_00205676
CI01000051_00414617_00476423.mRNA mRNA downstream 233334 414617 ~ 476423 (+) True CI01000051_00414617_00476423
CI01000051_00487642_00497395.mRNA mRNA downstream 306359 487642 ~ 498310 (+) True CI01000051_00487642_00497395
CI01000051_00514656_00517593.mRNA mRNA downstream 332532 513815 ~ 518014 (+) True CI01000051_00514656_00517593
CI01000051_00638200_00720543.mRNA mRNA downstream 456917 638200 ~ 720543 (+) False CI01000051_00638200_00720543
TU246252 other downstream 143182 324465 ~ 384128 (+) False G217075
TU246451 other downstream 456307 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246453 other downstream 539243 720772 ~ 724704 (+) True G217248
TU247404 other downstream 1878704 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 1878704 2059987 ~ 2065689 (+) True G218104

Expression Profile