RNA id: TCONS_00016094


Basic Information

Item Value
RNA id TCONS_00016094
length 394
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_008186
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 52189877 ~ 52191692 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgcataacATATTTTACCAATTCCACCTTACTTCCCACATGGGAAAAGTACGACAATTCAACAATGTAAAGAAAGACACAactacaaacaaaaatacaaaataaatatttcagttCGCATTTTGTCACTTTAGAACAGATAAAACCAATCATATAATCACTCTAGTGTCCACAACATCAAAAATCAATCACACTGTGTCTCATTGTcttatttttccccttttagttgTCCTTGAAATactccatagatatatacactagatatcgcatagggaccctgagcatgcgtcaatagcgccgccacattggtacagtgctcccaggacaaatgtcattcaaccgcagtagtcaagacagtgttattacgtgaagatgcaggactttatcgctgtc

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016093 lncRNA downstream 286239 51903159 ~ 51903638 (-) True XLOC_008184
TCONS_00016532 lncRNA downstream 352490 51826078 ~ 51837387 (-) True XLOC_008182
TCONS_00016092 lncRNA downstream 570419 51611220 ~ 51619458 (-) True XLOC_008179
TCONS_00016531 lncRNA downstream 1203271 50972410 ~ 50986606 (-) False XLOC_008176
TCONS_00016530 lncRNA downstream 1203271 50972410 ~ 50986606 (-) True XLOC_008176
TCONS_00016533 lncRNA upstream 206541 52398233 ~ 52408817 (-) False XLOC_008187
TCONS_00016534 lncRNA upstream 384271 52575963 ~ 52576704 (-) True XLOC_008192
TCONS_00015924 mRNA downstream 334830 51829317 ~ 51855047 (-) True XLOC_008183
TCONS_00015921 mRNA downstream 570489 51164056 ~ 51619388 (-) False XLOC_008179
TCONS_00015920 mRNA downstream 1150175 51023954 ~ 51039702 (-) True XLOC_008178
TCONS_00015919 mRNA downstream 1175585 50994138 ~ 51014292 (-) True XLOC_008177
TCONS_00015918 mRNA downstream 1297435 50839282 ~ 50892442 (-) True XLOC_008175
TCONS_00015926 mRNA upstream 185865 52377557 ~ 52408307 (-) False XLOC_008187
TCONS_00015927 mRNA upstream 203734 52395426 ~ 52408385 (-) False XLOC_008187
TCONS_00015929 mRNA upstream 208085 52399777 ~ 52408396 (-) False XLOC_008187
TCONS_00015931 mRNA upstream 226555 52418247 ~ 52433292 (-) True XLOC_008188
TCONS_00015932 mRNA upstream 284828 52476520 ~ 52480661 (-) False XLOC_008189
TCONS_00015925 other downstream 140603 52049158 ~ 52049274 (-) True XLOC_008185
TCONS_00015923 other downstream 436680 51753080 ~ 51753197 (-) True XLOC_008181
TCONS_00015922 other downstream 916577 51273185 ~ 51273300 (-) True XLOC_008180
TCONS_00015911 other downstream 2434927 49754834 ~ 49754950 (-) True XLOC_008166
TCONS_00015906 other downstream 3139989 49040191 ~ 49049888 (-) True XLOC_008156
TCONS_00015928 other upstream 206541 52398233 ~ 52405708 (-) False XLOC_008187
TCONS_00015930 other upstream 214063 52405755 ~ 52408817 (-) True XLOC_008187
TCONS_00015933 other upstream 284989 52476681 ~ 52478944 (-) True XLOC_008189

Expression Profile

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