RNA id: TU246729


Basic Information

Item Value
RNA id TU246729
length 205
lncRNA type intronic
GC content 0.28
exon number 1
gene id G217486
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 202778 ~ 202982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATTCTAATTTTGAATACTATGTAGGACATGTCAAAGTAAATGGCAATCTTGTGTCTAAAATTTAAGGTGCTTAATATTAACTTTTTAATTATAGGGCAATTTTATTTATTTTTATTGTCAATGTGTCCTCATACAGTACAGTAGGATCTGATAACAGAAAGGTCTATGAATAGAAAACAAAACACAAAGAAACTGAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246728 lncRNA downstream 2150 200404 ~ 200628 (-) True G217485
TU246727 lncRNA downstream 2743 199734 ~ 200035 (-) True G217484
TU246726 lncRNA downstream 15453 187062 ~ 187325 (-) True G217483
TU246725 lncRNA downstream 17279 184414 ~ 185499 (-) True G217482
TU246724 lncRNA downstream 18458 183889 ~ 184320 (-) True G217481
TU246730 lncRNA upstream 198 203180 ~ 203395 (-) True G217487
TU246731 lncRNA upstream 454 203436 ~ 204063 (-) True G217488
TU246732 lncRNA upstream 3867 206849 ~ 207294 (-) True G217489
TU246665 lncRNA upstream 8910 211892 ~ 213370 (-) True G217423
TU246666 lncRNA upstream 10632 213614 ~ 213852 (-) True G217424
CI01000051_00131867_00138611.mRNA mRNA downstream 63988 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 115419 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 145727 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 200239 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 21525 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 59459 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 75210 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 131071 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 143845 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 22809 242582 ~ 243026 (-) True G217491
TU246796 other upstream 79213 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 192249 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 197694 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 359214 567040 ~ 567155 (-) True G217528

Expression Profile