RNA id: TU246730


Basic Information

Item Value
RNA id TU246730
length 216
lncRNA type intronic
GC content 0.33
exon number 1
gene id G217487
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 203180 ~ 203395 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTCAGTCATGGGACTTTTATGCGGAGACTCTACTCATGTTTGCATAATGATGTATTTAAAAGTTAATGACCAAACGCATTGTAATACAAGTTCACAATGCTGTTGCAGATGAAATATAATGTGGATAATATTGAATAAATATCTTTTCGTCAGGTTAGATAATTATTATCACTCAAACCACTTTATTTAAAATGCTCGGTCTCACACATCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246729 lncRNA downstream 198 202778 ~ 202982 (-) True G217486
TU246728 lncRNA downstream 2552 200404 ~ 200628 (-) True G217485
TU246727 lncRNA downstream 3145 199734 ~ 200035 (-) True G217484
TU246726 lncRNA downstream 15855 187062 ~ 187325 (-) True G217483
TU246725 lncRNA downstream 17681 184414 ~ 185499 (-) True G217482
TU246731 lncRNA upstream 41 203436 ~ 204063 (-) True G217488
TU246732 lncRNA upstream 3454 206849 ~ 207294 (-) True G217489
TU246665 lncRNA upstream 8497 211892 ~ 213370 (-) True G217423
TU246666 lncRNA upstream 10219 213614 ~ 213852 (-) True G217424
TU246661 lncRNA upstream 10685 214080 ~ 215124 (-) True G217419
CI01000051_00131867_00138611.mRNA mRNA downstream 64390 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 115821 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 146129 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 200641 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 21112 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 59046 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 74797 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 130658 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 143432 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 22396 242582 ~ 243026 (-) True G217491
TU246796 other upstream 78800 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 191836 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 197281 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 358801 567040 ~ 567155 (-) True G217528

Expression Profile