RNA id: TU246731


Basic Information

Item Value
RNA id TU246731
length 628
lncRNA type intronic
GC content 0.36
exon number 1
gene id G217488
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 203436 ~ 204063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGGAAACTTGAAATGGCCTGAATTTAGCTTGTTTGTAGCTCCTTTTGAACAGAATTAAAGGAGGAGGACATTTGATCTTAAGCAGCCTCAGCTATACTGACATGATGAACCATTTTCTTTCGTGGAAATCAAATAGGAAAATCTGAAAGTACTGTAACGCCATGAAATTGAATGCATTACAAAACACTTATTTATGCTTTATAGAAGGATTAGTTTCAGTCCTCAAATTTGATTGGCTGAGTGACATTATAAGAGAGCAGCTGTGTTTGTACCACTCCACTTATCTGTGAGTCACTGAATCATTCACTCAACCGATTCAATCAAAATCACTGATTCATTTTGAAACAGCACTCCTGTGTGTTGCTGGAAGATGCACAAATGGCAACATTTTATTTGCTGTTGAATGACTTTCTTCACATTTTCATCTTTTTTTTTCCTTTTTCTTTTTTGCGGAGGAAAAAACAAATGCTGCATCCTAATTTGACTACTTACTATACCCTAAAAGTAGTATGTACTGTTTTTGTGAAGAAAAAGCACAAACTTTTGAGTGTGTTGCAGAAGAGTAGGCAAGCTTTGCCTTGTCAATCATCTTGTCACAGTTAAAATCCTCCACATTCAATTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246730 lncRNA downstream 41 203180 ~ 203395 (-) True G217487
TU246729 lncRNA downstream 454 202778 ~ 202982 (-) True G217486
TU246728 lncRNA downstream 2808 200404 ~ 200628 (-) True G217485
TU246727 lncRNA downstream 3401 199734 ~ 200035 (-) True G217484
TU246726 lncRNA downstream 16111 187062 ~ 187325 (-) True G217483
TU246732 lncRNA upstream 2786 206849 ~ 207294 (-) True G217489
TU246665 lncRNA upstream 7829 211892 ~ 213370 (-) True G217423
TU246666 lncRNA upstream 9551 213614 ~ 213852 (-) True G217424
TU246661 lncRNA upstream 10017 214080 ~ 215124 (-) True G217419
TU246662 lncRNA upstream 11421 215484 ~ 216767 (-) True G217420
CI01000051_00131867_00138611.mRNA mRNA downstream 64646 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 116077 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 146385 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 200897 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 20444 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 58378 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 74129 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 129990 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 142764 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 21728 242582 ~ 243026 (-) True G217491
TU246796 other upstream 78132 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 191168 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 196613 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 358133 567040 ~ 567155 (-) True G217528

Expression Profile