RNA id: TU246732


Basic Information

Item Value
RNA id TU246732
length 446
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G217489
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 206849 ~ 207294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACACTGACAACGCGTCGACAGACAAGACAGAACAAGATACTTTTGATAAGTCTCAAATTTAGTAATTTTTAAATAAATTTAAACAATAAAAACCATTTTGTGGCTCTTTAATGTGTCGTGACAGATCACTGTAGTGCCTCAGTTCAAGCGGCTCGTGAACTCTTACTACTAGTTATTTATAGCTCAAATAAACATGAATGAACATCAGAAGGAATGTTGTTTCAACCGCAGAAAGAGTCAGTACACACCATTTTTCAAGTTAATCTACTAAGGCCTTGTCCCAAATGGCAGCCTAAACACTCGCGGTCTTCCTACCAGTCCGCACTTTCGTGACGTAATGCCGCTTTGACTGTCGGGAAGATGCTGCGGAGCTCACACCAGTGCGTGCTTGGCAAAAGTGCGCATCGAGGGCGCATATCAACCGCAAAGGGGGCGCTCGTGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246731 lncRNA downstream 2786 203436 ~ 204063 (-) True G217488
TU246730 lncRNA downstream 3454 203180 ~ 203395 (-) True G217487
TU246729 lncRNA downstream 3867 202778 ~ 202982 (-) True G217486
TU246728 lncRNA downstream 6221 200404 ~ 200628 (-) True G217485
TU246727 lncRNA downstream 6814 199734 ~ 200035 (-) True G217484
TU246665 lncRNA upstream 4598 211892 ~ 213370 (-) True G217423
TU246666 lncRNA upstream 6320 213614 ~ 213852 (-) True G217424
TU246661 lncRNA upstream 6786 214080 ~ 215124 (-) True G217419
TU246662 lncRNA upstream 8190 215484 ~ 216767 (-) True G217420
TU246658 lncRNA upstream 9575 216869 ~ 218155 (-) True G217417
CI01000051_00131867_00138611.mRNA mRNA downstream 68059 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 119490 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 149798 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 204310 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 17213 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 55147 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 70898 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 126759 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 139533 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 18497 242582 ~ 243026 (-) True G217491
TU246796 other upstream 74901 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 187937 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 193382 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 354902 567040 ~ 567155 (-) True G217528

Expression Profile