RNA id: TU246666


Basic Information

Item Value
RNA id TU246666
length 239
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G217424
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 213614 ~ 213852 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCACGCATTACGTAATCACGTGTGACGTAGGCGGAGTGTTTACAAAGCGAACCTGCAAAGACTAAGTCAAACGGACTACAAAAAAAAAGGTAAAACAACAATGTCGGACAATTTCGAAGTTGGAGGAGAAAATGAGATGGAGTTTTTTGCTCTACTACTTCCGCCTACGTCACGCGCGACCTTTTCAACGCGATTACGTAATGCGTGGAGCATCACAGAGCAGTGCAAGACGAGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246665 lncRNA downstream 244 211892 ~ 213370 (-) True G217423
TU246732 lncRNA downstream 6320 206849 ~ 207294 (-) True G217489
TU246731 lncRNA downstream 9551 203436 ~ 204063 (-) True G217488
TU246730 lncRNA downstream 10219 203180 ~ 203395 (-) True G217487
TU246729 lncRNA downstream 10632 202778 ~ 202982 (-) True G217486
TU246661 lncRNA upstream 228 214080 ~ 215124 (-) True G217419
TU246662 lncRNA upstream 1632 215484 ~ 216767 (-) True G217420
TU246658 lncRNA upstream 3017 216869 ~ 218155 (-) True G217417
TU246798 lncRNA upstream 84198 298050 ~ 298268 (-) True G217553
TU246744 lncRNA upstream 178868 392720 ~ 394242 (-) False CI01000051_00394082_00407612
CI01000051_00131867_00138611.mRNA mRNA downstream 74824 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 126255 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 156563 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 211075 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 10655 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 48589 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 64340 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 120201 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 132975 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 11939 242582 ~ 243026 (-) True G217491
TU246796 other upstream 68343 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 181379 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 186824 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 348344 567040 ~ 567155 (-) True G217528

Expression Profile