RNA id: TU246349


Basic Information

Item Value
RNA id TU246349
length 267
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G217151
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 288843 ~ 289109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCATCAGGCTCTTCTGCTTGTATTTCCGCAACTTTTGATGCTTTGGATTTTGCAGAGATACTGGTTTTGGTAGAAATATCAGATCTTCCCGACATAGCACTTGGCACTCTGTCCCCTTTTTCCTCGTTATCAGTATTGACATCTGTTGCAGAAGCATTTGACTTTTTTGATTTTGCAGAAACATTTGACTTGGCAGACAAAGCACTTGAAGCTCTCTCTTCTTCTTGGTCTTTTGCATCAACAAGCTCATCAGTTAAAACATCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246344 lncRNA upstream 9263 279218 ~ 279580 (+) True G217146
TU246342 lncRNA upstream 19643 268832 ~ 269200 (+) True G217144
TU246275 lncRNA upstream 73663 214091 ~ 215180 (+) True G217088
TU246276 lncRNA upstream 73727 214076 ~ 215116 (+) False G217088
TU246284 lncRNA upstream 74981 213616 ~ 213862 (+) True G217095
TU246351 lncRNA downstream 2853 291962 ~ 292248 (+) True G217153
TU246250 lncRNA downstream 67770 356879 ~ 384128 (+) False G217075
TU246251 lncRNA downstream 67770 356879 ~ 384128 (+) True G217075
TU246272 lncRNA downstream 103527 392636 ~ 394298 (+) False G217086
TU246271 lncRNA downstream 103620 392729 ~ 394298 (+) True G217086
CI01000051_00194573_00205676.mRNA mRNA upstream 83108 193827 ~ 205735 (+) True CI01000051_00194573_00205676
CI01000051_00147585_00164301.mRNA mRNA upstream 123794 147585 ~ 165049 (+) True CI01000051_00147585_00164301
CI01000051_00094391_00124007.mRNA mRNA upstream 164683 94391 ~ 124160 (+) True CI01000051_00094391_00124007
CI01000051_00074000_00080983.mRNA mRNA upstream 207781 74000 ~ 81062 (+) True CI01000051_00074000_00080983
CI01000051_00017447_00029701.mRNA mRNA upstream 259042 17447 ~ 29801 (+) True CI01000051_00017447_00029701
CI01000051_00414617_00476423.mRNA mRNA downstream 125508 414617 ~ 476423 (+) True CI01000051_00414617_00476423
CI01000051_00487642_00497395.mRNA mRNA downstream 198533 487642 ~ 498310 (+) True CI01000051_00487642_00497395
CI01000051_00514656_00517593.mRNA mRNA downstream 224706 513815 ~ 518014 (+) True CI01000051_00514656_00517593
CI01000051_00638200_00720543.mRNA mRNA downstream 349091 638200 ~ 720543 (+) False CI01000051_00638200_00720543
CI01000051_00729622_00743172.mRNA mRNA downstream 440513 729622 ~ 743240 (+) True CI01000051_00729622_00743172
TU246252 other downstream 35356 324465 ~ 384128 (+) False G217075
TU246451 other downstream 348481 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246453 other downstream 431417 720772 ~ 724704 (+) True G217248
TU247404 other downstream 1770878 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 1770878 2059987 ~ 2065689 (+) True G218104

Expression Profile