RNA id: TU246821


Basic Information

Item Value
RNA id TU246821
length 243
lncRNA type intronic
GC content 0.35
exon number 1
gene id G217576
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 438301 ~ 438543 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGTGAGTCACAGACTTCACTGGGAGGTTTTCCTCCCTTTTCTCAAATAAAGATATCCTCGATGGAAGCGTTAGACTGCTATTGTTCTTAAAGTCCCCCTGTAGTCAATAATTTTATCCCTTAAAACTCATCTTTGATCACCAAAATGACATATTTAAACTTTTTTTTTTCTGTGAAAAAAAATATTCATGCCTTAAAATAGCTTGAATGTAACTCTACACCCTTGCTTCATTTAGTACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246820 lncRNA downstream 5170 432931 ~ 433131 (-) True G217575
TU246819 lncRNA downstream 8756 429304 ~ 429545 (-) True G217574
TU246818 lncRNA downstream 10058 428024 ~ 428243 (-) True G217573
TU246776 lncRNA downstream 23329 413846 ~ 414972 (-) True G217531
TU246777 lncRNA downstream 40877 397018 ~ 397424 (-) True G217532
TU246822 lncRNA upstream 5152 443695 ~ 443910 (-) True G217577
TU246823 lncRNA upstream 6565 445108 ~ 445352 (-) True G217578
TU246824 lncRNA upstream 7774 446317 ~ 446683 (-) True G217579
TU246825 lncRNA upstream 8233 446776 ~ 447054 (-) True G217580
TU246826 lncRNA upstream 11197 449740 ~ 450044 (-) True G217581
CI01000051_00394082_00407612.mRNA mRNA downstream 30689 393311 ~ 407612 (-) False CI01000051_00394082_00407612
CI01000051_00383638_00388102.mRNA mRNA downstream 50199 383322 ~ 388102 (-) True CI01000051_00383638_00388102
CI01000051_00357855_00378052.mRNA mRNA downstream 60249 356834 ~ 378052 (-) True CI01000051_00357855_00378052
CI01000051_00346827_00352024.mRNA mRNA downstream 85920 346827 ~ 352381 (-) True CI01000051_00346827_00352024
CI01000051_00334616_00337009.mRNA mRNA downstream 101104 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00478608_00478959.mRNA mRNA upstream 39687 478230 ~ 478959 (-) False CI01000051_00478608_00478959
CI01000051_00505008_00505358.mRNA mRNA upstream 66465 505008 ~ 505468 (-) True CI01000051_00505008_00505358
CI01000051_00520062_00525658.mRNA mRNA upstream 81267 519810 ~ 525658 (-) True CI01000051_00520062_00525658
CI01000051_00560810_00563417.mRNA mRNA upstream 122225 560768 ~ 563417 (-) False CI01000051_00560810_00563417
CI01000051_00568303_00576339.mRNA mRNA upstream 129324 567867 ~ 576339 (-) True CI01000051_00568303_00576339
TU246751 other downstream 32506 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 42319 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 155672 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 195275 242582 ~ 243026 (-) True G217491
TU246773 other upstream 123653 567040 ~ 567155 (-) True G217528
TU247764 other upstream 1270755 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 2088800 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 2401727 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2521045 2961403 ~ 2961494 (-) True G219914

Expression Profile