Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00015932 |
| length | 988 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 4 |
| gene id | XLOC_008189 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 52476520 ~ 52480661 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0034427 | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | biological_process |
| GO:0071034 | CUT catabolic process | biological_process |
| GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
| GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
| GO:0071049 | nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription | biological_process |
| GO:0071051 | polyadenylation-dependent snoRNA 3'-end processing | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0034475 | U4 snRNA 3'-end processing | biological_process |
| GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0021693 | cerebellar Purkinje cell layer structural organization | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
| GO:0000177 | cytoplasmic exosome (RNase complex) | cellular_component |
| GO:0000178 | exosome (RNase complex) | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050706-140 | Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis; cerebellar Purkinje cell layer structural organization; and chordate embryonic development. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in brain and eye. Used to study pontocerebellar hypoplasia type 1B. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1B. Orthologous to human EXOSC3 (exosome component 3). |
| ensembl_id | ENSDART00000158353 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016533 | lncRNA | downstream | 67703 | 52398233 ~ 52408817 (-) | False | XLOC_008187 |
| TCONS_00016094 | lncRNA | downstream | 284828 | 52189877 ~ 52191692 (-) | True | XLOC_008186 |
| TCONS_00016093 | lncRNA | downstream | 572882 | 51903159 ~ 51903638 (-) | True | XLOC_008184 |
| TCONS_00016532 | lncRNA | downstream | 639133 | 51826078 ~ 51837387 (-) | True | XLOC_008182 |
| TCONS_00016092 | lncRNA | downstream | 857062 | 51611220 ~ 51619458 (-) | True | XLOC_008179 |
| TCONS_00016534 | lncRNA | upstream | 95302 | 52575963 ~ 52576704 (-) | True | XLOC_008192 |
| TCONS_00015931 | mRNA | downstream | 43228 | 52418247 ~ 52433292 (-) | True | XLOC_008188 |
| TCONS_00015929 | mRNA | downstream | 68124 | 52399777 ~ 52408396 (-) | False | XLOC_008187 |
| TCONS_00015927 | mRNA | downstream | 68135 | 52395426 ~ 52408385 (-) | False | XLOC_008187 |
| TCONS_00015926 | mRNA | downstream | 68213 | 52377557 ~ 52408307 (-) | False | XLOC_008187 |
| TCONS_00015924 | mRNA | downstream | 621473 | 51829317 ~ 51855047 (-) | True | XLOC_008183 |
| TCONS_00015934 | mRNA | upstream | 39543 | 52520204 ~ 52521460 (-) | True | XLOC_008190 |
| TCONS_00015935 | mRNA | upstream | 42056 | 52522717 ~ 52552875 (-) | False | XLOC_008191 |
| TCONS_00015936 | mRNA | upstream | 44926 | 52525587 ~ 52542928 (-) | True | XLOC_008191 |
| TCONS_00015937 | mRNA | upstream | 92815 | 52573476 ~ 52583021 (-) | False | XLOC_008192 |
| TCONS_00015930 | other | downstream | 67703 | 52405755 ~ 52408817 (-) | True | XLOC_008187 |
| TCONS_00015928 | other | downstream | 70812 | 52398233 ~ 52405708 (-) | False | XLOC_008187 |
| TCONS_00015925 | other | downstream | 427246 | 52049158 ~ 52049274 (-) | True | XLOC_008185 |
| TCONS_00015923 | other | downstream | 723323 | 51753080 ~ 51753197 (-) | True | XLOC_008181 |
| TCONS_00015922 | other | downstream | 1203220 | 51273185 ~ 51273300 (-) | True | XLOC_008180 |
