RNA id: TCONS_00015935


Basic Information

Item Value
RNA id TCONS_00015935
length 4306
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_008191
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 52522717 ~ 52552875 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGCTCCTCCAACGGACCCCTGCGCGGCAGAGATGGAGCCGCGGGCCGCCTGCTGATGCCCGGCCGCAGGATGGAGCCCCGCCCGCCCCGCAGCGCCACCGCCCGGCCGCAGTATGGAGGATTCCCGCAACACCAGCGGATTCCTGCGGGACCACAACTACTCCACCGAAGCTGATATCATCTCTACTGTGGAGTTCAACCCCAGCGGAGAGCTGCTGGCCACCGGAGACAAAGGAGGACGAGTGGTGGTCTTCCAGAGAGAGCAGGAGAGCAAGAACCAGCCTCACAGACGGGGAGAGTATAATGTTTACAGCACGTTTCAGAGTCACGAGCCGGAGTTTGACTATCTGAAGAGTTTAGAAATCGAGGAGAAGATCAATAAGATTCGCTGGCTTCCTCAGCAGAACGCCGCCTACTTCCTGCTGTCCACCAACGATAAAACTGTGAAACTGTGGAAGATCAGTGAGAGAGACAAGCGGCCCGAGGGATATAATCTGAAGGATGAGGACGGAAGAGTCCGAGATCCGGCCACTATCACCACATTACGGGTGCCGGTGCTGCAGCCGATGGATCTGATGGTGGAGGCTTCAGCGCGAAGGGTTTTCTGCAACGCACACGCATACCACATCAACTCCATCTCCATCAACAGCGACGGCCAGACCTTCATGTCCACCGATGACCTGCGAATCAACCTGTGGAACCTGGAGGTCACAGACAGCAGCTTCAACATGGTGGACATGAAGCCGGTGAATATGGAGGATCTGACGGAGGTGATCACGAACGCAGAGTTCCACCCCCAGCACTGCAACACCTTCGCCTACAGCAGCAGTAAAGGCTCCATACGCCTGTGTGACATGAGGGACGCGGCGCTCTGCGACAAACACTCCAAATTTTTCGAGGAGCCAGAAGACCCAAGCAATCGCTCGTTTTTCTCGGAAATCATCTCCTCCATCTCTGATGTAAAGTTCAGCCACAGCGGCCGCTACCTGATGACCCGCGACTACCTGACGGTGAAGGTGTGGGATCTGAATATGGAGAGCAAACCGCTGGAGACGTACCAGGTGCATGATTACCTGAGAGGTAAACTCTGCTCGCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTTTGGAACGGATCCGACAGCGTGATCATGACTGGTTCCTACAACAACTTCTTCCGAATGTTCGACCGCAACACGAAGCGTGATGTGACTCTGGAGGCGTCGCGGGAGAACAGCAAACCCCGCGCCGTACTGAAGCCGCGCAGAGTGTGTGTGGGAGGAAAACGCCGCAAAGACGAGATCAGTGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACACCGGCTGGCATCCGTACGAGAACATCATCGCAGTGGCGGCCACCAATAACCTCTACATCTTCCAGGACAAGATCAACTAGCACAGGAGATGATGAGGAGCTAACTCTGCGTTAATCTTCCATGAACTCctatttatttatactatttattacGGTCTTCACTGAAGGGAAATGCTTGAGTCTTTAAAGGGTTCGTTCACCAAAAATGgataattctgtcatcaattactctCCCTCATGACAATTCAGTCCTCCAAATCCTtcatttatcttcagaacacaagaCATTTTAGATGAAATGTAAAAGCTCTCTTATCCTGTTTCCATACACATCATTTTACGCACATTCTGAaatgttgttgtgctgattgtaaaGGCCTCAGTCAGTCCGTCATCACAGTGCCTCAGTATTCTTCTtctattattccctccagaactgtcttgagcatctcgtcaccttagaattacaaGGTTCTCTCTGagattttgtcaaaattgagttattcacatactcttattaaatgacaacttatttacattatgggatgttttttataagttgtttacattttaggagttttttgtttttgaacaaATATCACACACGTACTGTtagctatggaatgcaaaaactgtgAAGCTCGATGTCTcgaaatcattcagaacgcagagagaaccttaaaattccaaggtgacgatctGTCTGCGCTCCCGTCTCATGCCTCCAGGAGCCTCCACACTCACCGTGTTGATTGCGTTTGGTCTTGGTGTTCTGACTCATTTATTAGAGGAGAACAGCACAGTGGAGAATCCCCTCAGTGCAGCAGCCTCCACTCCTCTCCTGTGCTGGAGCTGATGCTCTACTGTGATGGAGATGCTGATTTACTCACTACTGATTTATGACATAttacagttttgcacataaatccaAGTcatatctttggatggaaacacatcTGTAGACAATCCTGAGAGCCTCAAACTCCAGACAAGACCAAAAACATTGAGTGTTGTCTTAAGATCAAACTAGTATGCCTGTCTTTTGTCTCTTTCCTGCAGGcgcaggacatcaacatgatgtcatattgacgttgtaccccagtgTTGTGgagattttgtttggaaattaaaatcagGTTGGcttcagaacccaacgtcaatgtccaaccaaatatcaacgtctaatcatggtACATGTTACACGTTGTTTgtacattaccactatgacatctattagatgttggattttggttactttccaacacaacctaaaataaaccaaatgtaAACGTCATTTGACATCGATATTGGACGTCCGAATAACGTTGTCCTTTAAAGACATTAAagtttggtcacctgacgtcatgatctaaatctaacctaatatttacCTCTTATGATGCTGGGTTATAATGGAGTGTGTTTCCATGTTTGTGTGTATACAGCTAATTCTAATGCCAATACATTGTTCTGTTATGTAcagtaaacacaaacacacaccttgaCCTCACGAGGGAAAGAAGATATAAGTAGGCCCATACGgaatcagcagatttttagcccatcattaattctgtttatttacttgagtaaatatgcgtaaatctatatttattcagtttttaaataattacagtaatattattgacaaatatgaaaatgttcatctgatttatgtacagtgcagtgtgtacagtaatattttccgTCTttcagtagagatattatatgagacttgatttgtttaccaaataaagtgaatctaattgatttgcattgtaaagattaattaaaagttaaaaaagatatcattttttatttcatatattagggttttagttatgaaactcccaaaatcattccgcataagtccacagatttttaccataattctcagcagaaatagcaaaaaacatccgctcATTCCGTCTGGCCATAGATATAAGCAGAATGAGTATTTTTGCACACAGAAGGGTTGTAGGAGCTTGTTATAATTACAGCTGAACCACTGCAGACACACAAAATGTTTAGACAATGTTTTGTTCCTGGTCATCTCGGGGCTCTTGCTGTCTTTGGcggatgagagagctccaggatttcatctaaaacatcttcatttgtgttctggaGATGAACGAAGCTCTCAGAGGATTGAAAGAAGATGAGGGAGAGCAATTAACAACAGAATGATCTTTTTTGTGTGAACCAACCCTTTAAATCTGGACAAATGTGAAGTTTCACTGCAGTGATGTAAAGAATTATAAGCTGTGAACAGAACGGCTGATACTCTGGCATAAGAGACAAAGGGGTgccttcacaaacacacactggatTCGATCCCCTTTGAAACACAGCTACGAATGTGACTCTGATTCACGTTTCTGGAGTCAGTCCTGCTGGTCCAGTTTGGTCATTTCATGTCGTCCTTTTCTTTGTTAATAAGCTGTGTGCCTTCTTTTGGTATGTGGGTGCTCGGGCGGGAGGGTTTTTGATGGTGGTGTTTGGGTTGTGATGTGTGAATGTTTTTACAAGATAGCTTTGTGTGAGAAGTGGGATAAGAAAAGCTAAATTGTGGTTTTTCAGTACACAGAATTGAAGTACTTGAATTTAAGTCTCCACTGTGTGCTCATAACTTTACAGTTTAGCCattgtgtttagttttttgcGCATTCTCCAGTGCTGTGCTGGGTGCAAAGTATTACTGCATGCAACAACTCACATGATCAGATCTCACTTGTTTTCCACTGTCTGAGACTGTTAAACTTCACAGTTGTGTCATATTGGCCTGAGGGTGACAGGAGCGCCGGTATCATGATGTAGCCTAACATGATGTGAAGGTTCAGTGGTATCAGGGAATTTTATTATGTACAAATGAAGCTGTAATGTTCTCTTCTGAAGAGGAAATCAACCTTCAGTTGTAAACTTCTTAATAAATCAAAGTTTTATAGTGC

Function

GO:

id name namespace
GO:0070262 peptidyl-serine dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-168 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in peptidyl-serine dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2C (protein phosphatase 2 regulatory subunit Bgamma).

Ensembl:

ensembl_id ENSDART00000170107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016533 lncRNA downstream 113900 52398233 ~ 52408817 (-) False XLOC_008187
TCONS_00016094 lncRNA downstream 331025 52189877 ~ 52191692 (-) True XLOC_008186
TCONS_00016093 lncRNA downstream 619079 51903159 ~ 51903638 (-) True XLOC_008184
TCONS_00016532 lncRNA downstream 685330 51826078 ~ 51837387 (-) True XLOC_008182
TCONS_00016092 lncRNA downstream 903259 51611220 ~ 51619458 (-) True XLOC_008179
TCONS_00016534 lncRNA upstream 23088 52575963 ~ 52576704 (-) True XLOC_008192
TCONS_00015934 mRNA downstream 1257 52520204 ~ 52521460 (-) True XLOC_008190
TCONS_00015932 mRNA downstream 42056 52476520 ~ 52480661 (-) False XLOC_008189
TCONS_00015931 mRNA downstream 89425 52418247 ~ 52433292 (-) True XLOC_008188
TCONS_00015929 mRNA downstream 114321 52399777 ~ 52408396 (-) False XLOC_008187
TCONS_00015927 mRNA downstream 114332 52395426 ~ 52408385 (-) False XLOC_008187
TCONS_00015937 mRNA upstream 20601 52573476 ~ 52583021 (-) False XLOC_008192
TCONS_00015933 other downstream 43773 52476681 ~ 52478944 (-) True XLOC_008189
TCONS_00015930 other downstream 113900 52405755 ~ 52408817 (-) True XLOC_008187
TCONS_00015928 other downstream 117009 52398233 ~ 52405708 (-) False XLOC_008187
TCONS_00015925 other downstream 473443 52049158 ~ 52049274 (-) True XLOC_008185
TCONS_00015923 other downstream 769520 51753080 ~ 51753197 (-) True XLOC_008181

Expression Profile

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