RNA id: TU247912


Basic Information

Item Value
RNA id TU247912
length 316
lncRNA type intronic
GC content 0.35
exon number 1
gene id G218575
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1678981 ~ 1679296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCAATATGTGGCCTTTTTGACTAATAATTATAGTCACTTTGCTGACTAGCAGAACTTTTCCCTTGTTATTTTTCTAAAAGGACCAATAGTTTGAGTGAATTGTTGTGTAAATAAACTTCATTTGATCAATTTAGCACACATCATGTTTGCTGTATATCATACACTGGTTAGTTGTCTCATGGAAAGTTGTCACAAGGGCTAGATCTCAGTAAATATGAAGTTTTGTGTTAATGATCTTATTTAGTGGTCGACCGATAATGGTTTTCGCTTCCAACACATCGGCCAAACAGAAAAATATATCAGCCGATGCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247910 lncRNA downstream 4300 1674451 ~ 1674681 (-) True G218573
TU247909 lncRNA downstream 9034 1669731 ~ 1669947 (-) True G218572
TU247908 lncRNA downstream 9260 1669267 ~ 1669721 (-) True G218571
TU247906 lncRNA downstream 12151 1666487 ~ 1666830 (-) True G218569
TU247905 lncRNA downstream 13055 1665704 ~ 1665926 (-) True G218568
TU247798 lncRNA upstream 3614 1682910 ~ 1683268 (-) True G218464
TU247913 lncRNA upstream 4644 1683940 ~ 1684263 (-) True G218576
TU247788 lncRNA upstream 9125 1688421 ~ 1689211 (-) True G218454
TU247915 lncRNA upstream 11758 1691054 ~ 1691294 (-) True G218578
TU247805 lncRNA upstream 28541 1707837 ~ 1762911 (-) True G218471
CI01000051_01644907_01652696.mRNA mRNA downstream 26262 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01560871_01627451.mRNA mRNA downstream 51316 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01528013_01535266.mRNA mRNA downstream 143715 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01511542_01512516.mRNA mRNA downstream 166427 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01468663_01486168.mRNA mRNA downstream 191809 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01716468_01720230.mRNA mRNA upstream 37163 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01785489_01787612.mRNA mRNA upstream 105186 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01789888_01790134.mRNA mRNA upstream 110465 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
CI01000051_01809480_01841801.mRNA mRNA upstream 130184 1809480 ~ 1841801 (-) True CI01000051_01809480_01841801
CI01000051_01852579_01861297.mRNA mRNA upstream 173128 1852424 ~ 1861883 (-) True CI01000051_01852579_01861297
TU246773 other downstream 1111826 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1273186 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1282999 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1396352 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 1435955 242582 ~ 243026 (-) True G217491
TU247764 other upstream 30002 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 848047 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1160974 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1280292 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2476434 4155730 ~ 4158103 (-) True G220041

Expression Profile