RNA id: TU247950


Basic Information

Item Value
RNA id TU247950
length 571
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G218613
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1788326 ~ 1788896 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTAAAGCACCCTTCCCCAGCTGAGTGTCACATCCTGTATCCCATTCATAAACTCCGCGGCGAGGCCACCACAAAAGGCCTCGCGACGCGCGTCGAGGAGACGTGTAGGTGATCATGTCGTTTTCCCGCGCGGCTATTATTATCTCAGGAAAGGGGCAATGACAATAGCGGTAGTCTCGAGCTTTCCAAAACGGGGTCCTGTCCTGACCTGAGTGAGGTCACGTACCACAGTGCGAGTGCACGCGGTGCCAAAGAGATGGAGGAGCGCGCGCACTCTCACCTCATTACGGGCGCCAAATAAACGCGTCAAAGGACTGGGACGCGACAATTTGGCATCCTAAATTGGTTGTATAAGAGTTTCCATGGGGGAACTTAATGAATGTGGATCTTTTGTTCGCCCTGTCCTAAAATAAATCACAAATTGCAAACCAATAACATGAAGCTGAATAGCTTGTTCTTCAGTCTATTAAAAACCGAAGATGCAAGGAAAATTTGATTGGAAGAGAGAACTACAAATAGACCTACTTTCACTTTTTTGTTGTAGTGAATAAATGACACATGATCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247761 lncRNA downstream 2248 1784416 ~ 1786078 (-) False CI01000051_01785489_01787612
TU247805 lncRNA downstream 25415 1707837 ~ 1762911 (-) True G218471
TU247915 lncRNA downstream 97032 1691054 ~ 1691294 (-) True G218578
TU247788 lncRNA downstream 99115 1688421 ~ 1689211 (-) True G218454
TU247913 lncRNA downstream 104063 1683940 ~ 1684263 (-) True G218576
TU247954 lncRNA upstream 7616 1796512 ~ 1796923 (-) True G218617
TU247958 lncRNA upstream 11981 1800877 ~ 1801108 (-) True G218621
TU247966 lncRNA upstream 75221 1864117 ~ 1864351 (-) True G218629
TU247967 lncRNA upstream 77543 1866439 ~ 1866639 (-) True G218630
TU247802 lncRNA upstream 103949 1892845 ~ 1893626 (-) True G218468
CI01000051_01785489_01787612.mRNA mRNA downstream 622 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01716468_01720230.mRNA mRNA downstream 67418 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01644907_01652696.mRNA mRNA downstream 135607 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01560871_01627451.mRNA mRNA downstream 160661 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01528013_01535266.mRNA mRNA downstream 253060 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01789888_01790134.mRNA mRNA upstream 865 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
CI01000051_01809480_01841801.mRNA mRNA upstream 20584 1809480 ~ 1841801 (-) True CI01000051_01809480_01841801
CI01000051_01852579_01861297.mRNA mRNA upstream 63528 1852424 ~ 1861883 (-) True CI01000051_01852579_01861297
CI01000051_01894807_01902190.mRNA mRNA upstream 105423 1894319 ~ 1902190 (-) True CI01000051_01894807_01902190
CI01000051_01915943_01920786.mRNA mRNA upstream 126478 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
TU247764 other downstream 566 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1221171 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1382531 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1392344 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1505697 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 738447 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1051374 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1170692 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2366834 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3725056 5513952 ~ 5518824 (-) True G221575

Expression Profile