RNA id: TU247954


Basic Information

Item Value
RNA id TU247954
length 412
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G218617
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1796512 ~ 1796923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGAAACTGATCAACTCCAGAAACGCAATCACGACTGGAGTAGGATGTTTCTCTATGGTAAGTGTCACCTTAGTTTGCTTTATTTATAAGACGTGATAGCACTGTTATACTTTATGTAGTTGCACAGAATGCCAAGTGAAGCTGAAAACCTCTAACATAAGATAAACATTTAGGCCAGATGTGTACAAACTTTTTCATCATAACTATTAATAAAGTAAAAAATGGCTATATTATTGTTTGACATTACAATGGGTGTTTACTGTTTACAGAGAGAATACTTCAACTAGTTAGCATGGACTAGCATCTTAACATCCTATTACAATACAGATAGAACTCCACGCTACTGTAATAATAAAAACGCAGAGGAAAAAAACAGTTTGTTTTACAGTTATGTAAGCGAACCGGGCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247950 lncRNA downstream 7616 1788326 ~ 1788896 (-) True G218613
TU247761 lncRNA downstream 10434 1784416 ~ 1786078 (-) False CI01000051_01785489_01787612
TU247805 lncRNA downstream 33601 1707837 ~ 1762911 (-) True G218471
TU247915 lncRNA downstream 105218 1691054 ~ 1691294 (-) True G218578
TU247788 lncRNA downstream 107301 1688421 ~ 1689211 (-) True G218454
TU247958 lncRNA upstream 3954 1800877 ~ 1801108 (-) True G218621
TU247966 lncRNA upstream 67194 1864117 ~ 1864351 (-) True G218629
TU247967 lncRNA upstream 69516 1866439 ~ 1866639 (-) True G218630
TU247802 lncRNA upstream 95922 1892845 ~ 1893626 (-) True G218468
TU247978 lncRNA upstream 150686 1947609 ~ 1947949 (-) True G218641
CI01000051_01789888_01790134.mRNA mRNA downstream 6378 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
CI01000051_01785489_01787612.mRNA mRNA downstream 8808 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01716468_01720230.mRNA mRNA downstream 75604 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01644907_01652696.mRNA mRNA downstream 143793 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01560871_01627451.mRNA mRNA downstream 168847 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01809480_01841801.mRNA mRNA upstream 12557 1809480 ~ 1841801 (-) True CI01000051_01809480_01841801
CI01000051_01852579_01861297.mRNA mRNA upstream 55501 1852424 ~ 1861883 (-) True CI01000051_01852579_01861297
CI01000051_01894807_01902190.mRNA mRNA upstream 97396 1894319 ~ 1902190 (-) True CI01000051_01894807_01902190
CI01000051_01915943_01920786.mRNA mRNA upstream 118451 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
CI01000051_01926867_01942055.mRNA mRNA upstream 129763 1926686 ~ 1942055 (-) True CI01000051_01926867_01942055
TU247764 other downstream 8752 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1229357 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1390717 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1400530 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1513883 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 730420 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1043347 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1162665 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2358807 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3717029 5513952 ~ 5518824 (-) True G221575

Expression Profile