RNA id: TU247795



Basic Information


Item Value
RNA id TU247795
length 3996
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G218461
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1964836 ~ 1968831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAAGATTTAAACTCGCAATTGCGAGTTATGAAGTCAGAATTGTGTGATATAAAGACAGAATTGTGAGATATAGTCGCAATTTTGACTTTTTCTCGCAACTGCGAGGTTTTATCACGCAATACTGATTTTTTTCAGAGAATTTTGAGATATAAAGTCAGAATTGCGTGATATAAAGTCAGAATTACGAGATATAAAGTCAGAATTGCGAGTTATAAAATCAGAATTGCATGATATAAAGTCAGAATTGTGAGTTATAAAGTCAGAATTACGAGTTATAAAGTCAGAATTGCGTGATATAAAGTCAGAAGTACGAGATATAAAGTCAGAATTACGAGTTATAAAGTCAGAATTATGAGATATAAAGTCGGAATTGCGTGATATAAAGTCAGAATTACGAGTTATAAAGTCAGAATTGCGAGATAAAGTCAGAAGTACGAGATATAAAGTCAGAATTGCGAGTTATGAAGTCAGAATTATGAGATATAAAGTCACAGTTCAGACTTTATAACTTGCAATTGTGAGTTTATATCTCACAATTTTGAAAAAAAGCTTCCATAGAATGGTGTACACTTGAATCAGATGAAGACTATATTAGTTTTCTATAAAAAGTGGTTTATTTATGCATGGTGCAGGTCACTCCCTCAATGTATTTCGCCATGTTGAAATGACGTGACCCGTAGAGAATCCTCACGCTCACTGGCTGCCTCCTCTGTAGTTACGCTAGTAGCATAATGTTGTTTGATGATGCAAAGAATGAAAATTAGACAAAATAAACTCACTTATCGTGTTTACCAGCGGAGACAACGGGAAAATCAGTATGTGTACAGCAGAAAAAGTCTGAAGGCAGTAGACAGAAAGACCAACAAAAACAAAAAACGAGCGTCATTCACAAGGTGGAAAGTTTTGAAGGAGAAAATCCTGACAAGTGATGCCCAAGTTGCATATTTTTTGTCAGACAGGTAAGGAAATTAATTGTTGTGTTGACCGCTCTCTTAAACTTACTAGTATCAGTGTAATTTACATAAAACTGATGATCATTCTGAAACACATTGATAGATGGCAGCGGATGGTCTAACACCATTGTGGTATTGGTACTAGCTATATACTGTAGCCTATAGCCTATATTCTAGAAGGCTATTGGGTTGCAAAGTTGTCTCTTCAAGATTTTTACAAAAATAATCTTATCACATATAATAACGTTCTCTGAAAGAGGTAAGATTCTCTAAGATTCAATTACCCAACCGCTTAACCCAGTTACAGAGTGAGTGAATTTAGACTTAAACGAATCTTGATGGGCCTTCAGAAAGCACAAACACAGACCCCAGTGTAATGACAGGAAGAGAAGGAAGACACTGAGTTAGACTGGATGAATGACTGGACGGTTGTGGTGAGATCATTTACATTAAATGTAGGGTAGGCAATTTTTTCATAAACACTTTTTGTTATTCTGGTTGAAACTCTCTTCACATCCTGATAGCAATCAATAATAAAAGTCTAAATATGAAAAAAAAAAAAAAAAAATGCACATATATTGTCTCTGGAAGTCTCATGAGGTAATTTAACACTATCTCTTATGACTCTTATGCTGCATCTGCTCTGGCTGTGCATGACCTCATGTGTTTTAAAGGAGGCTTTGGAGACGCTCTGAAGGGAGGGTAAGATCACATGCTCTAACTGCTCCGAAATTGCCTACCCTACCTTTAACCTTGCACTCTTAAATGCATGAAATCTAAATTGACAATTCTTTTTTTACAGAATGTTACAGTGTTTATTATAAATGATTTATCCGTGCACATCATTATTTTTAAAAAATTCATATGTCCTCATAATCTATAATCAAAAAATTTACCCTCCCCCTCCCCTCGAGACGACATTTGTTCAGCAGACTAAATATATTCCACAAATGACTGCAAATTGGCATTCATATCTGCATCCATTTAGTTAACAATGCCCAACTTCCTACGATCCAATTAATTTTTCGAGGACAAAATCAAGTCCCAGCCTACATTTTCTCATTCCTAATGAGTTTGTAGAGGCTTATATATATATATATATATATATATATATATATAGTGCTGCCAAATCGATTAATCGTGATTAATCACATCTAACATAAAAGTTTGTAAATATATACACTCGAACCAAAAATTATTCAGACATTTTTCATATTTTTTATATATTTTTACTAGTGGGTAAACTAACAGTATTGGTGATTGCCAATTAATTTTTTATGTTTCTGTAATGGTTAATCCAATTTTCGAATTTACTGTTTTAAATTCAAATTTGGGTATAAAAACAGGAATTCAATTTTACATTCCTCACTCCAGTTCAAAATGGTGAAACGTCGAGAAGAACTCTCTGAAAAGGTAAGAGTCTGCATTAAAATAAAATATTTCTGTTTTCTGACAGGTGGTCTAATAAATATTTGTGTTTTCTGTTTTCTGACAGGTGGTCTAATAAATTTGTTAAGCACTGTATATATATATATATATATATATATATCTTACTCTAACCTTTGTTCATCCAAGCTTTCAGCACTTAAGTCCTGTTTTTCAGCCCCACAGAGCTCTTCCTTCTCTGCCAGCATAACAGTCACCTGTTGGACAGGGGAAACACTCTAATGTAACACACTCTGTCAAATTATACGCACATTATAATCAAAGTCAATTGCTTGAACATAAACATAAAATCCATCTATTACCGAACAGTGGGAACAGCCCACTTTCCTTACCCTGGGGTAACACTGACACACTGACCAGACAGTCCCCATGCCCACCATTATCACTCCCACAGCGCAGAACGTGGCGAACACCTGTGGTTCCTCTACGGAAATCATGAACAGACCTAACGCCACAAACGCCATCCCAAGAATGATGAGCCCGTAGCGGTACGGCTTGTTCTCTGCCATGGAAGAAACTTGGAGGTCCAGCAGTGGTTAACAGAGGAAAGTACCGGTGAGAGTGTGGAGCTTTATGACTGTGTCCCTATAGAGGTGAAGGGCAGACTGAGAGGGCAGGAGTGACTGACAGGACGCAGAGCCAGTGGAGAACCAAGATCCAGATCATTAAACCTGTAATGGGCCTTAGTCAGGTGACCTTCCCCCAGGGAAAATTGCATTGGCTTAAAAAGTCTTACTACGTTCCTTTCCAGAATACTGGCATATTAACAATATAGTAGAAGATAAGTAAAGTACAAGTACATACAAAAACATCTGGTTTCAGACAAGGCTTAAGCCTAGTCACAGACTAAAATGCATGTTTGAGCTGTTTTAAACTGGATTTATGCCTCTTTTCACAAGATATAAGTCTCTGGTGTCCCCAGAATGCGTCTGTGAAGTTTTAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGTCCCTGTTTAGGTGTGAGCAAAAACATGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTCCCTGCCAGGGTGGAGCTTTAACAGCTCACGCTTCGGTTGCTCAACAACAACAAACCTGGAGAATCTCACGCAGTGAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCAGAGTCGACAGTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAACGAAACTGGACGTTTCTGAATGGATAGTGGATAAATGTATGTAGTTGCTGTAGCATGTATGTTAATCTTTTGTACAAAATCCGTACGGACGCCAACTATACATAGCGTACATGTTTACCAAACAGAGCCATACATTCCAGGCTAAAGTTTGTGATCAAAAGCTGTGAATGGTCTAATATTTTTTTTCCAAAATATCGCTCGGACAGAAACACTCGTTTTTTAGCAATCGAGCTTGCCAGGGTTAACTTGCAGGCTATCCAAGCTAACGAGACTCAAAATAGCCAACAACAGAACAGTTAGCATGTTTTGCTCGAACTTTTGCCATGACGTTATAACTTTGCCACTGTTGTCGCTTGCAAAAACAAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247794 lncRNA downstream 470 1961057 ~ 1964366 (-) True G218460
TU247809 lncRNA downstream 3957 1960604 ~ 1960879 (-) True G218475
TU247784 lncRNA downstream 10803 1952806 ~ 1954033 (-) True G218450
TU247978 lncRNA downstream 16887 1947609 ~ 1947949 (-) True G218641
TU247802 lncRNA downstream 71210 1892845 ~ 1893626 (-) True G218468
TU247980 lncRNA upstream 5834 1974665 ~ 1974959 (-) True G218643
TU247800 lncRNA upstream 7296 1976127 ~ 1976492 (-) True G218466
TU247982 lncRNA upstream 7990 1976821 ~ 1977056 (-) True G218645
TU247987 lncRNA upstream 100194 2069025 ~ 2069249 (-) True G218650
TU248111 lncRNA upstream 238111 2206942 ~ 2207172 (-) True G218770
CI01000051_01926867_01942055.mRNA mRNA downstream 22781 1926686 ~ 1942055 (-) True CI01000051_01926867_01942055
CI01000051_01915943_01920786.mRNA mRNA downstream 44050 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
CI01000051_01894807_01902190.mRNA mRNA downstream 62646 1894319 ~ 1902190 (-) True CI01000051_01894807_01902190
CI01000051_01852579_01861297.mRNA mRNA downstream 102953 1852424 ~ 1861883 (-) True CI01000051_01852579_01861297
CI01000051_01809480_01841801.mRNA mRNA downstream 123035 1809480 ~ 1841801 (-) True CI01000051_01809480_01841801
CI01000051_01989511_02060303.mRNA mRNA upstream 20640 1989471 ~ 2060303 (-) True CI01000051_01989511_02060303
CI01000051_02148607_02152701.mRNA mRNA upstream 179638 2148469 ~ 2153425 (-) True CI01000051_02148607_02152701
CI01000051_02297468_02301682.mRNA mRNA upstream 328070 2296901 ~ 2302394 (-) False CI01000051_02297468_02301682
CI01000051_02359343_02360115.mRNA mRNA upstream 390260 2359091 ~ 2360115 (-) True CI01000051_02359343_02360115
CI01000051_02362692_02367269.mRNA mRNA upstream 392936 2361767 ~ 2367269 (-) True CI01000051_02362692_02367269
TU247764 other downstream 177076 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1397681 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1559041 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1568854 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1682207 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 558512 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 871439 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 990757 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2186899 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3545121 5513952 ~ 5518824 (-) True G221575

Expression Profile