RNA id: TU248111


Basic Information

Item Value
RNA id TU248111
length 231
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G218770
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2206942 ~ 2207172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGTATAGTGCCTAAAAGTTCTAGTACTTTATCAATTTAATTTGAACAAGAAACAAAACCTCCAAATATGAGATTTGGCAGGTATACAGGTTTGGAACGGTTTGGAAATGATGAGGAAATGTATTGTAAAGTTGCAAGTGTATAGTGTGTCTATAATCAGGAAAAATAATTGTATTGTTATCAGGGGCATTTCCTCCGAGGAGGCAACAGAGGCATTGCCTCACTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247987 lncRNA downstream 137693 2069025 ~ 2069249 (-) True G218650
TU247982 lncRNA downstream 229886 1976821 ~ 1977056 (-) True G218645
TU247800 lncRNA downstream 230450 1976127 ~ 1976492 (-) True G218466
TU247980 lncRNA downstream 231983 1974665 ~ 1974959 (-) True G218643
TU247795 lncRNA downstream 238111 1964836 ~ 1968831 (-) True G218461
TU248107 lncRNA upstream 38313 2245485 ~ 2245499 (-) True G218766
TU248075 lncRNA upstream 104925 2312097 ~ 2316726 (-) True G218734
TU248057 lncRNA upstream 143309 2350481 ~ 2354144 (-) True G218716
TU248089 lncRNA upstream 185239 2392411 ~ 2395777 (-) True G218748
TU248106 lncRNA upstream 283618 2490790 ~ 2526178 (-) True G218765
CI01000051_02148607_02152701.mRNA mRNA downstream 53517 2148469 ~ 2153425 (-) True CI01000051_02148607_02152701
CI01000051_01989511_02060303.mRNA mRNA downstream 146639 1989471 ~ 2060303 (-) True CI01000051_01989511_02060303
CI01000051_01926867_01942055.mRNA mRNA downstream 264887 1926686 ~ 1942055 (-) True CI01000051_01926867_01942055
CI01000051_01915943_01920786.mRNA mRNA downstream 286156 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
CI01000051_01894807_01902190.mRNA mRNA downstream 304752 1894319 ~ 1902190 (-) True CI01000051_01894807_01902190
CI01000051_02297468_02301682.mRNA mRNA upstream 89729 2296901 ~ 2302394 (-) False CI01000051_02297468_02301682
CI01000051_02359343_02360115.mRNA mRNA upstream 151919 2359091 ~ 2360115 (-) True CI01000051_02359343_02360115
CI01000051_02362692_02367269.mRNA mRNA upstream 154595 2361767 ~ 2367269 (-) True CI01000051_02362692_02367269
CI01000051_02391113_02451758.mRNA mRNA upstream 182710 2389882 ~ 2451758 (-) True CI01000051_02391113_02451758
CI01000051_02561929_02569617.mRNA mRNA upstream 353905 2561077 ~ 2570235 (-) True CI01000051_02561929_02569617
TU247764 other downstream 419182 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1639787 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1801147 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1810960 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1924313 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 320171 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 633098 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 752416 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 1948558 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3306780 5513952 ~ 5518824 (-) True G221575

Expression Profile