RNA id: TU248075


Basic Information

Item Value
RNA id TU248075
length 4414
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G218734
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2312097 ~ 2316726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTGAATTTGGGGTGACTTGGACAGTGAGATTCATCCTAATATGCAACACATAACATTGATGCTTTCTGCTTGGTTAGCGATTAGTATCAGTGCTTGTTGATATATTCATTGTTCATACCCCACAGATGCGAAGCATACTTGACTTACCAGTGACATTTAATCCAGTTTGCCGGTCTGAAAGGTCTGACTAAGCTGCTTCCTGGTACCTCTCTGGGGAGGCATCAGTTCTAAAAGAGATTTCTTGTTTACTTGTTGGAATGGAAATGAGAAATCAACTTAAATAGTACAAGATATTACCACCGTCAACGCTTACCCTGAATTAAAACAATGTGTGAACGACTTGGCCCTCAGTCATTTAACCTAGCGAGGAGATCAAAGTGAAGGAAAAGGTTTTGGTCTCATGATTTCTTGTCGTTTTTAGCTGCTTTTAACTTCTCCTTTATCCGTGACATTCCAGGAGGCCGATGGTAGAGTTATGGAGTGCCAGAGAACCCTTTGGGAGTCTCTCTCATTTAGGTCTGACTACATTAACCTCCACCTCTAAAGCTGAGAAGGTCTGGTCCACCTCTATAAATATTTTCCAGAATTTCTCAAATTCTTCAACGCAGACCGAGGGCGGCTTCCACTCTTGAAGTGACATCTGGTATAATTTTCGGTCGGCGTTATGCAGGGGCAAACTCAGGAAAGGGAGGGAAGAGGAAAAGGTAGTCTCGCTAGGCCGCTCTCCTGTTTTCCCTCCCTCACTCTGACTCTTTGCCCTAGGTGTGGCCAGCTGTGCTGTGAAATGTAATCCCCCCAGTTTTTTTTTCCTACATCGTTTCCCTGAGCCCCAAACCCTCCCTCTTTCTCCCATTCACAGGGTGTAATTGCAGGAGACCGTCTAAAGCTGCCACATGGCGTTCAGGAAAGACTTTGACCTGCTGTAGCTGTCAGTCAGATGGAGTGATGGAGTCTTCCTGCAGTGCTCCATTAACTTCTGCTGTTGCAACGTTTCCCCATCCCGTTTATATAGTTTACATGTGTTTTGGACTTCTTTTCAGCAACTCCATTTAGTCCTCTAGGAATGGCCACTCAGCTTTACACATTTCTTCTGATACTTCGGTTACACTGAACTGTGGACAGATATAACAAAAAAAACATTTTATAGAAGTTTTTAGGGCTGTCACGATTCCTCGATTAAATATGAGTACTTGATTTTAAGCAACCCTCCATTACAATTTATCCGCGGCAAGTAACCGGCAAAATACCGGAAGTGGCGCGTTCCATGGACAAGAATCCATGATCTGCATTATTAGACTGTTTTCCAAGGTTGCATGATGTACGAATTTAAAAACCATACTATAGCATACTATAGCATAGTGTTATTGTGAATTCACAAAAGCTGCAATTCAATTAAATATATATATATATAAAATGTTAATTTGGTAACGCAATGTGTGCCATTTCATCAGATTCATCATTTAACGCCAACACAGGGAGAATACATCAACATGTCCAAATATACGAACTGGTCATCGCGATTTCAAAATAAAAGTTCAAATCGTTGCTCTCAGTTTGCATGTTATGATGTCCACCTATTCTTGTTCAAGAAATTACATTGGCTTTAGCAGTGTAGTAAATGTTTTTATATGTGTGTTTTAAGTCATTTTAAAGGCTTAGGTCTTTGCCTAGGTCTATTTTTATTACAAAAAAAAATATCTGATTACTCGTCAAAATAATCGACCAATTACTCGATTACAAAATAATCATCAGTGACAGCCCTAGAATTTTTTACTATAATCTGTTTATAAATGTGTGTGTATATATATATATATATATATATATATATATATATATACACATAGCCTACGTTTATATTTATATATTTATACTGAACCCAAAACATTAAAAGGAAAGTTATTATAAAGTTTTACCAAGAAAATCTAGCTTTTTCCAATGATAGCCTGAAGCATAAAGCTGTGAGATTAGAGCTGGTTAGAAAGTCGACATTTATTGAGACTAATTTCAGACAACCTTCCTGCAGATCAGTCCTCTGTGGGTTTTTGCAGCCACTTTATATCAAGAAATGACAAAAGAAATGGCCATTACTGCATGTTACATAATGAGGTGACATATTAGATGATAAAATAACACCTACTCTGCCATTAACTAAAAACCAAGCTGGGTTCGTTGAAACGTAAACAGGATTTCAGAAGTCATTCCTCTGAATGAGAAGCTGCCACAGATCTTTGGAAAGTGATGTTAGGAGTCTCTTGGCTCCTGAGGGAGCTGTATTTTGTAATAGTCAGCATTAAGGCTGGAGGGTTACAGTGTGATGTAGGAATGGTTTCCATATGAGTGCTCTTGGAGTACAGTAAAGTCATCTGGGCCTCAGATGGAGTCACAGACTGCCTCGCCTTGCCTCGGCTTCACCGCTAGTAATGACGCTGTCAAAACATTGTGCCCACTCTCAGTATTTGTGTATGTCTAAGTGCACATGTGCTGTACAACGTGTTTGACTGTTTGTTCAAGAACCTGCTAGGGTGTTTGTGTATGTCTAAGTATATGTGTGTGTGTGTGTAAGAGAGGCTGGTTTTTGAGGTTGCTGCCATGTGATTTAATCATATGCTTGTAGAGTTTATGCGACGAAGTGGGTTGGCGTAGGTAGCAATTAGATAGGCAGACATGAGCATGACTGACCATCAGCTGGCTCTTTAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTCGGCTACAACTTTATCACATCCAGAGGGTCTCTTGGAGTGTGTACTCATGATAACACACTCTTCGGTTTCATTATGGTCACTAAATTCCTCCGGTGTGGACGCTGTTCTCTGTGATCAGCCGCTGCATATCTTTGCCAGTTTACGGCTCTTTGTTTGCGCTCGAAACAATAGCGTAAGATCTTCAGGGGTGTAGAGTCAAGTATGAGGAACCCCTGCTGGTTTGTAGGCCTCTCTACGAGGTAAACACACAAATGATTTGTTTATTTATTCTCAGTGTTAATTGTAGTCTATTTCCTTTCACTAGTCTATATTGTATCCTGTAAGCTATTGTTTCAGCAAATGAGGCATTGTGTGTGTACGAGTCTGTGGGATGCATCAGCTATAGCTGTCACAGCAGGACAATCATCCGCAGTTCGCTCAGCTTGATTGTAATTCCAGGGTGTTTGCAGGAATCTTTCTGGAGTGTGTGCATGTGTTTTGTGGAATGGGATTTCTTCAAATCCAGTGTGGGCATTTCATCTAGCACCGAAAGGCCAAGGGTGACCTCACAGCCACCCTCACACGACAAGCGCTCTTTCACTTTTTCTGGGTCATATGGATTAAGTCCAGGGTGCTTGGCATTCCTGAGTGTAAGCCTAGCTGGCCCCTAAAGGGCCGTCACCCTGCGCGCATTTGTATGCTAATGAGATCTGTGTCACCAAAGCTAATATTCTAATGTGATGGATAATACTCAAACAAATGATATTCAATATAGTTCAAATGTGGCTTTAGAGAAGGAATTATCTTAAGAATAAACTAGGATGAGAAGGGTGGGGCTAGGAGGGATTGATGTTAATAAACTTTGCATATTAATTAAAAATAATATTATATAAAAATGAAAATGCATCTGTGCTGTTTCAGCAGATGACTCAAGTGACTATATAGAGCAGTGTTATTGTTAACTAAAATTAAAAATAGTTTTCTTTAATTTAAATAAAATAATAGATGAAAAACTTTCTAACTGGAGTTTCTAACTGAAATGAAAAGTTTACATTGAAGTGCTAGCATTATTAAATCTGAATAAAACTGAAATAAATAAACATTAAAGCAAAGCAAAAATGTTTGATAAACTAATAAAAATGACGAGCATGAAATAAAATTACTACATCCAAAAGTAAATTTCGAATGAATGTAATTATCTTGTTCAACTTTCAGAATTTGAGGAACACCAGTATATAGTGTTCTCAAAAGTACCGACTTAGGTACCAAGTCAGTACTGAAATTTAAAAAATGTGACGCTTTGAGCGCTGTTAAACAGATTCGTAAACCCCTCTGATTGGCCTTTGTGTTGATGCTCTGTGATTGGCTACAATGATCAACGCTTTAAAAGCATGTTGTAAATAGACATCAGTGACGCTCTTCACCGAGTGCTTCACAGATACACACGGCAGCATTTGAAAGCAGGCGTCTATCAGCGGACCAGTCCGCTGATTGACGCCTGCTTATAAACGCTCCCGTTCCCGCTTTCAAAATGCTTTCATATTTAAACACTTCCGTTTGCTTTCAAATGCTTCCGTGCGTTAATCATTGTAGACAATTACAGACATATATATGTTGAGCGCGTGAACACAAAGGCCAATCAGAGGTGTTTACGAATCCGCGCAACAGCGCTCAAAGCGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248107 lncRNA downstream 130 2245485 ~ 2245499 (-) True G218766
TU248111 lncRNA downstream 104925 2206942 ~ 2207172 (-) True G218770
TU247987 lncRNA downstream 242848 2069025 ~ 2069249 (-) True G218650
TU247982 lncRNA downstream 335041 1976821 ~ 1977056 (-) True G218645
TU247800 lncRNA downstream 335605 1976127 ~ 1976492 (-) True G218466
TU248057 lncRNA upstream 33755 2350481 ~ 2354144 (-) True G218716
TU248089 lncRNA upstream 75685 2392411 ~ 2395777 (-) True G218748
TU248106 lncRNA upstream 174064 2490790 ~ 2526178 (-) True G218765
TU248169 lncRNA upstream 206133 2522859 ~ 2523575 (-) True G218823
TU248176 lncRNA upstream 262251 2578977 ~ 2579265 (-) True G218829
CI01000051_02297468_02301682.mRNA mRNA downstream 9703 2296901 ~ 2302394 (-) False CI01000051_02297468_02301682
CI01000051_02148607_02152701.mRNA mRNA downstream 158672 2148469 ~ 2153425 (-) True CI01000051_02148607_02152701
CI01000051_01989511_02060303.mRNA mRNA downstream 251794 1989471 ~ 2060303 (-) True CI01000051_01989511_02060303
CI01000051_01926867_01942055.mRNA mRNA downstream 370042 1926686 ~ 1942055 (-) True CI01000051_01926867_01942055
CI01000051_01915943_01920786.mRNA mRNA downstream 391311 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
CI01000051_02359343_02360115.mRNA mRNA upstream 42365 2359091 ~ 2360115 (-) True CI01000051_02359343_02360115
CI01000051_02362692_02367269.mRNA mRNA upstream 45041 2361767 ~ 2367269 (-) True CI01000051_02362692_02367269
CI01000051_02391113_02451758.mRNA mRNA upstream 73156 2389882 ~ 2451758 (-) True CI01000051_02391113_02451758
CI01000051_02561929_02569617.mRNA mRNA upstream 244351 2561077 ~ 2570235 (-) True CI01000051_02561929_02569617
CI01000051_02918395_02918916.mRNA mRNA upstream 601590 2918316 ~ 2918916 (-) True CI01000051_02918395_02918916
TU247764 other downstream 524337 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1744942 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1906302 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1916115 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 2029468 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 210617 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 523544 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 642862 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 1839004 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3197226 5513952 ~ 5518824 (-) True G221575

Expression Profile