RNA id: TU249480


Basic Information

Item Value
RNA id TU249480
length 244
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G219958
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2903037 ~ 2903280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAATTCTTCATTTTCTTCAGCAAAAGAGTTTTGAATCGCGTTGACTCTCTCGTGAGAAGTAAATCACAGTTTCTTTCTGTTGCAAGGCATGTGATTGGCTGTTTGCCACTGATGTCACGCATTCATGTGCACGCGCTCCACAAACTCAGGATCAAAGCCTGAGTTGACAGAGAAAGTTGATGATCAGCATCATGGTACCAACAAAGCCGGATTGGAGTGGTTTGGTTTTGTCAACTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248236 lncRNA downstream 28161 2874623 ~ 2874876 (-) True G218881
TU248196 lncRNA downstream 218042 2684739 ~ 2684995 (-) True G218848
TU248178 lncRNA downstream 319611 2583211 ~ 2583426 (-) True G218831
TU248176 lncRNA downstream 323772 2578977 ~ 2579265 (-) True G218829
TU248106 lncRNA downstream 376859 2490790 ~ 2526178 (-) True G218765
TU249446 lncRNA upstream 136346 3039626 ~ 3040912 (-) True G219924
TU249512 lncRNA upstream 209827 3113107 ~ 3113431 (-) False G219989
TU249513 lncRNA upstream 209827 3113107 ~ 3113493 (-) True G219989
TU249524 lncRNA upstream 297628 3200908 ~ 3201271 (-) False G219997
TU249525 lncRNA upstream 297628 3200908 ~ 3201537 (-) True G219997
CI01000051_02561929_02569617.mRNA mRNA downstream 332802 2561077 ~ 2570235 (-) True CI01000051_02561929_02569617
CI01000051_02391113_02451758.mRNA mRNA downstream 451279 2389882 ~ 2451758 (-) True CI01000051_02391113_02451758
CI01000051_02362692_02367269.mRNA mRNA downstream 535768 2361767 ~ 2367269 (-) True CI01000051_02362692_02367269
CI01000051_02359343_02360115.mRNA mRNA downstream 542922 2359091 ~ 2360115 (-) True CI01000051_02359343_02360115
CI01000051_02297468_02301682.mRNA mRNA downstream 600643 2296901 ~ 2302394 (-) False CI01000051_02297468_02301682
CI01000051_02918395_02918916.mRNA mRNA upstream 15036 2918316 ~ 2918916 (-) True CI01000051_02918395_02918916
CI01000051_02920005_02939882.mRNA mRNA upstream 16177 2919457 ~ 2939882 (-) True CI01000051_02920005_02939882
CI01000051_02941319_02952102.mRNA mRNA upstream 38032 2941312 ~ 2952102 (-) True CI01000051_02941319_02952102
CI01000051_02955633_02960400.mRNA mRNA upstream 52100 2955380 ~ 2961148 (-) False CI01000051_02955633_02960400
CI01000051_02966203_03000592.mRNA mRNA upstream 60891 2964171 ~ 3000592 (-) True CI01000051_02966203_03000592
TU248216 other downstream 62405 2840270 ~ 2840632 (-) True G218861
TU248069 other downstream 356578 2527343 ~ 2546459 (-) True G218728
TU247764 other downstream 1115277 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 2335882 567040 ~ 567155 (-) True G217528
TU246751 other downstream 2497242 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU249434 other upstream 56308 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 1252450 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 2610672 5513952 ~ 5518824 (-) True G221575
TU251621 other upstream 3229493 6132773 ~ 6133579 (-) True G221840
TU252631 other upstream 5438869 8342149 ~ 8342652 (-) True G222729

Expression Profile