RNA id: TU248766


Basic Information

Item Value
RNA id TU248766
length 217
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G219316
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3835288 ~ 3835504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCATTCTAAAAGTTGTAACTTTTTCCTGAGTCTCTCCATCAGTGTCCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTATTGACAATCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGCTGTTAAAACTCCGCCCTCTTTTGGAAAGCGGCCGGGAGCAGCAGCTCATTTGCATTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248764 lncRNA upstream 2630 3832409 ~ 3832658 (+) True G219314
TU248692 lncRNA upstream 9937 3810745 ~ 3825351 (+) True G219253
TU248749 lncRNA upstream 53213 3778632 ~ 3782075 (+) True G219303
TU248687 lncRNA upstream 125528 3708630 ~ 3709760 (+) True G219249
TU248598 lncRNA upstream 182693 3649759 ~ 3652595 (+) True G219176
TU248768 lncRNA downstream 3681 3839185 ~ 3839477 (+) True G219318
TU248772 lncRNA downstream 9218 3844722 ~ 3844926 (+) True G219322
TU248773 lncRNA downstream 9534 3845038 ~ 3845305 (+) True G219323
TU248774 lncRNA downstream 10463 3845967 ~ 3846210 (+) True G219324
TU248778 lncRNA downstream 13981 3849485 ~ 3849696 (+) True G219328
CI01000051_03800655_03819155.mRNA mRNA upstream 16091 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 136325 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 152760 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 375364 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 383474 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_04038453_04045552.mRNA mRNA downstream 202903 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 235640 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 246028 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 258850 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 320180 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
TU248359 other upstream 588415 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1769205 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1769599 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 538906 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1079470 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1109454 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1123925 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1182801 5018305 ~ 5052033 (+) False G219803

Expression Profile