RNA id: TU248768


Basic Information

Item Value
RNA id TU248768
length 293
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G219318
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3839185 ~ 3839477 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTCTCCGATGCGCCACGCATTACGTAATCACGTAGGAAAGGTCACGACTGACATTGGCGAAAGTACCACGGTAGGGCAAAAAACATCTCATTTTCTCCTCTAACTTCAAAATCGTCCGACATAGTTGTTTTACCTTTTTTTGTAAAGGGCGATTGGCTTAGTCTTTGCACGTTCGCTTTGTAAACACTTGCTTGGTACTTCCGCCTACATTACGCATTACAATGTGATTATGCAATGCGTGGCACATCACAGAGCAGTGAAAGATGAGCATTTGTGGTTAAAAGGTATACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248766 lncRNA upstream 3681 3835288 ~ 3835504 (+) True G219316
TU248764 lncRNA upstream 6527 3832409 ~ 3832658 (+) True G219314
TU248692 lncRNA upstream 13834 3810745 ~ 3825351 (+) True G219253
TU248749 lncRNA upstream 57110 3778632 ~ 3782075 (+) True G219303
TU248687 lncRNA upstream 129425 3708630 ~ 3709760 (+) True G219249
TU248772 lncRNA downstream 5245 3844722 ~ 3844926 (+) True G219322
TU248773 lncRNA downstream 5561 3845038 ~ 3845305 (+) True G219323
TU248774 lncRNA downstream 6490 3845967 ~ 3846210 (+) True G219324
TU248778 lncRNA downstream 10008 3849485 ~ 3849696 (+) True G219328
TU248780 lncRNA downstream 10974 3850451 ~ 3850720 (+) True G219330
CI01000051_03800655_03819155.mRNA mRNA upstream 19988 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 140222 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 156657 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 379261 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 387371 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_04038453_04045552.mRNA mRNA downstream 198930 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 231667 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 242055 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 254877 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 316207 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
TU248359 other upstream 592312 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1773102 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1773496 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 534933 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1075497 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1105481 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1119952 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1178828 5018305 ~ 5052033 (+) False G219803

Expression Profile