RNA id: TU248778


Basic Information

Item Value
RNA id TU248778
length 212
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G219328
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3849485 ~ 3849696 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTCTCATTTTTATTTTCTTAAGTTTAAGTTTTTAATCTGATATTTAACCTTTATTTCAATTAACAAAAGCCATTTTTAATAGTTTTAGTTAGACAACACTAAACGCTGATCCACTGAAGTTTCTTACAAGCTTGTTACACTTCCCTTCAGGGAAACCATGTTTTTGAATAAGGCCATTATTATACACACCAGTAATCTTAATATTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248774 lncRNA upstream 3275 3845967 ~ 3846210 (+) True G219324
TU248773 lncRNA upstream 4180 3845038 ~ 3845305 (+) True G219323
TU248772 lncRNA upstream 4559 3844722 ~ 3844926 (+) True G219322
TU248768 lncRNA upstream 10008 3839185 ~ 3839477 (+) True G219318
TU248766 lncRNA upstream 13981 3835288 ~ 3835504 (+) True G219316
TU248780 lncRNA downstream 755 3850451 ~ 3850720 (+) True G219330
TU248786 lncRNA downstream 7234 3856930 ~ 3857268 (+) True G219336
TU248804 lncRNA downstream 65090 3914786 ~ 3915288 (+) True G219354
TU248807 lncRNA downstream 68340 3918036 ~ 3918837 (+) True G219357
TU248739 lncRNA downstream 73657 3923353 ~ 3923705 (+) False G219294
CI01000051_03800655_03819155.mRNA mRNA upstream 30288 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 150522 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 166957 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 389561 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 397671 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_04038453_04045552.mRNA mRNA downstream 188711 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 221448 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 231836 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 244658 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 305988 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
TU248359 other upstream 602612 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1783402 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1783796 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 524714 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1065278 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1095262 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1109733 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1168609 5018305 ~ 5052033 (+) False G219803

Expression Profile