RNA id: TU248865


Basic Information

Item Value
RNA id TU248865
length 217
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G219414
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4014015 ~ 4014231 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAAGACAACACTATATAGAGCTGTTACCAATCAATTGAAATCACTAACAAAATTCATCTTTACACTGCAGAGGTGGAACAGAAGTTGCATCTGAATTGGTACAATTACAAATGCATAAATAATGTTGAGATTAATGTTTTTAAAATAAAATTTTGTGAACATTTGTAAAAATTCAATATTACGTTTGCAATTGTGCTCATGTTTGTGAAAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248860 lncRNA upstream 3600 4010179 ~ 4010415 (+) True G219409
TU248856 lncRNA upstream 8988 4004814 ~ 4005027 (+) True G219405
TU248732 lncRNA upstream 55982 3951502 ~ 3958033 (+) True G219289
TU248738 lncRNA upstream 58383 3953349 ~ 3955632 (+) True G219293
TU248817 lncRNA upstream 63350 3950436 ~ 3950665 (+) True G219366
TU248879 lncRNA downstream 12595 4026826 ~ 4027033 (+) True G219428
TU248880 lncRNA downstream 13591 4027822 ~ 4028047 (+) True G219429
TU248882 lncRNA downstream 15508 4029739 ~ 4029945 (+) True G219431
TU248885 lncRNA downstream 18248 4032479 ~ 4032755 (+) True G219434
TU248895 lncRNA downstream 36864 4051095 ~ 4051477 (+) False G219438
CI01000051_03800655_03819155.mRNA mRNA upstream 194818 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 315052 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 331487 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 554091 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 562201 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_04038453_04045552.mRNA mRNA downstream 24176 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 56913 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 67301 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 80123 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 141453 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
TU248359 other upstream 767142 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1947932 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1948326 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 360179 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 900743 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 930727 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 945198 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1004074 5018305 ~ 5052033 (+) False G219803

Expression Profile