RNA id: TU248879


Basic Information

Item Value
RNA id TU248879
length 208
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G219428
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4026826 ~ 4027033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATAGCAAATGCACTCGCGCCCATCTGTTCGCCCATGGGCGTGCTGGTCTGAAAACGAGGTGTGTTCAGGTGCATTGTTGGCGTGTTGCTTTTTTGAGGCAACTGAAAATGACTGCACCATTAATCAACAAAAACCTGCTCTAAAGTCAATGGCGCAGTAATTTTTTTGTTATTTAAAGGGCGCGTTAGTAATATGCCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248865 lncRNA upstream 12595 4014015 ~ 4014231 (+) True G219414
TU248860 lncRNA upstream 16411 4010179 ~ 4010415 (+) True G219409
TU248856 lncRNA upstream 21799 4004814 ~ 4005027 (+) True G219405
TU248732 lncRNA upstream 68793 3951502 ~ 3958033 (+) True G219289
TU248738 lncRNA upstream 71194 3953349 ~ 3955632 (+) True G219293
TU248880 lncRNA downstream 789 4027822 ~ 4028047 (+) True G219429
TU248882 lncRNA downstream 2706 4029739 ~ 4029945 (+) True G219431
TU248885 lncRNA downstream 5446 4032479 ~ 4032755 (+) True G219434
TU248895 lncRNA downstream 24062 4051095 ~ 4051477 (+) False G219438
TU248889 lncRNA downstream 24099 4051132 ~ 4051477 (+) False G219438
CI01000051_03800655_03819155.mRNA mRNA upstream 207629 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 327863 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 344298 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 566902 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 575012 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_04038453_04045552.mRNA mRNA downstream 11374 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 44111 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 54499 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 67321 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 128651 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
TU248359 other upstream 779953 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1960743 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1961137 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 347377 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 887941 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 917925 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 932396 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 991272 5018305 ~ 5052033 (+) False G219803

Expression Profile