RNA id: TU248893


Basic Information

Item Value
RNA id TU248893
length 512
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G219438
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4051095 ~ 4051643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTGACAAGCTTTATGGAGATGCTGATTTCCTTTTCCAGCAGGACTTTAGCACCTGCCCACAGTGCAAAAACCACTTCCAAGTGGTTTGCTGACCATGATATTACTGTGTTTTATTGGCCAGCCAACATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCTGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATATGTGCTGCCGACCAAGTATTGAGTGCACAAATGAACATACTTTAAAGAACTTGAACTTTTCTGTTTAGCAAATCCATTTTTTGATTGATCTTAGGAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATGAGCTGTACACTCTAATCATCAAAATTTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248885 lncRNA upstream 18377 4032479 ~ 4032755 (+) True G219434
TU248882 lncRNA upstream 21187 4029739 ~ 4029945 (+) True G219431
TU248880 lncRNA upstream 23085 4027822 ~ 4028047 (+) True G219429
TU248879 lncRNA upstream 24099 4026826 ~ 4027033 (+) True G219428
TU248865 lncRNA upstream 36901 4014015 ~ 4014231 (+) True G219414
TU248897 lncRNA downstream 3469 4055112 ~ 4055966 (+) True G219439
TU248898 lncRNA downstream 4556 4056199 ~ 4056441 (+) True G219440
TU248910 lncRNA downstream 11611 4063254 ~ 4063453 (+) True G219451
TU248911 lncRNA downstream 12758 4064401 ~ 4064853 (+) True G219452
TU248903 lncRNA downstream 19308 4070951 ~ 4071357 (+) True CI01000051_04071144_04075444
CI01000051_04038453_04045552.mRNA mRNA upstream 4604 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_03800655_03819155.mRNA mRNA upstream 231935 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_03687377_03698806.mRNA mRNA upstream 352169 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03679568_03682342.mRNA mRNA upstream 368604 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03457204_03459579.mRNA mRNA upstream 591208 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_04071144_04075444.mRNA mRNA downstream 19501 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04081532_04085798.mRNA mRNA downstream 29889 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04094412_04101387.mRNA mRNA downstream 42711 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04155754_04157992.mRNA mRNA downstream 104041 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
CI01000051_04374052_04393328.mRNA mRNA downstream 321015 4372658 ~ 4393677 (+) False CI01000051_04374052_04393328
TU248359 other upstream 804259 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1985049 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1985443 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 322767 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 863331 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 893315 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 907786 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 966662 5018305 ~ 5052033 (+) False G219803

Expression Profile