RNA id: TU248940


Basic Information

Item Value
RNA id TU248940
length 214
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G219481
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4151463 ~ 4151765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAATCACAGCAGCTGTCAGTCAGCGCAGCGCAAGATCAATGATTTTGGCACACTTGTGAAAACACATTTTATTCAATTAATCTAACTAAAGTGCACAATAAATATTTAATTTTTGCAGTTTTGAATAACTAAATTAATGCTATGCCTGTCTATTTAAGTGACTATATTCTGATTATAAACTAAGTATTACACTACTGATGCTCAACACACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248927 lncRNA upstream 28526 4122548 ~ 4122937 (+) True G219468
TU248903 lncRNA upstream 80106 4070951 ~ 4071357 (+) True CI01000051_04071144_04075444
TU248911 lncRNA upstream 86610 4064401 ~ 4064853 (+) True G219452
TU248910 lncRNA upstream 88010 4063254 ~ 4063453 (+) True G219451
TU248898 lncRNA upstream 95022 4056199 ~ 4056441 (+) True G219440
TU248943 lncRNA downstream 2677 4154442 ~ 4154766 (+) True G219484
TU248957 lncRNA downstream 44762 4196527 ~ 4197145 (+) True G219497
TU249002 lncRNA downstream 84931 4236696 ~ 4237117 (+) True G219534
TU249007 lncRNA downstream 93413 4245178 ~ 4245849 (+) True G219539
TU249012 lncRNA downstream 95853 4247618 ~ 4247819 (+) True G219543
CI01000051_04094412_04101387.mRNA mRNA upstream 49947 4094354 ~ 4101516 (+) True CI01000051_04094412_04101387
CI01000051_04081532_04085798.mRNA mRNA upstream 65541 4081532 ~ 4085922 (+) True CI01000051_04081532_04085798
CI01000051_04071144_04075444.mRNA mRNA upstream 74338 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
CI01000051_04038453_04045552.mRNA mRNA upstream 104935 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_03800655_03819155.mRNA mRNA upstream 332266 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_04155754_04157992.mRNA mRNA downstream 3919 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
CI01000051_04374052_04393328.mRNA mRNA downstream 220893 4372658 ~ 4393677 (+) False CI01000051_04374052_04393328
CI01000051_04419475_04464134.mRNA mRNA downstream 267505 4419270 ~ 4464166 (+) True CI01000051_04419475_04464134
CI01000051_04763063_04778692.mRNA mRNA downstream 610731 4762496 ~ 4779082 (+) True CI01000051_04763063_04778692
CI01000051_04796878_04799272.mRNA mRNA downstream 645113 4796878 ~ 4799321 (+) True CI01000051_04796878_04799272
TU248359 other upstream 904590 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 2085380 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 2085774 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 222645 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 763209 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 793193 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 807664 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 866540 5018305 ~ 5052033 (+) False G219803

Expression Profile