RNA id: TU249394


Basic Information

Item Value
RNA id TU249394
length 230
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G219880
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5103527 ~ 5103756 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGAACGTAGGAGAATACAAATACCACATCAACATAAAAAAATACCGGACAAAGAATACAAAGGGAGAGTTAATTAACAGAACTAGGAACAGGTGTAGGGTTAATTAAGAACCAAGGAAACTAACTAGGGACACAGAACACAGGCAAATGAGAACAGGAAACACAGTAAAATCAAAACCAAAACAGAACATACACGTTACAGACAGCCCTTGCAAAAAATAATTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249391 lncRNA upstream 7327 5095978 ~ 5096200 (+) True G219877
TU249315 lncRNA upstream 31390 5071617 ~ 5072137 (+) True G219806
TU249382 lncRNA upstream 33619 5069684 ~ 5069908 (+) True G219868
TU249381 lncRNA upstream 34246 5069064 ~ 5069281 (+) True G219867
TU249380 lncRNA upstream 34807 5068458 ~ 5068720 (+) True G219866
TU249395 lncRNA downstream 1166 5104922 ~ 5105147 (+) True G219881
TU249314 lncRNA downstream 4182 5107938 ~ 5108192 (+) True G219805
TU249409 lncRNA downstream 40915 5144671 ~ 5144882 (+) True G219895
TU250306 lncRNA downstream 73582 5177338 ~ 5177567 (+) True G220701
TU250331 lncRNA downstream 95018 5198774 ~ 5198997 (+) True G220725
CI01000051_05072860_05074568.mRNA mRNA upstream 28653 5072629 ~ 5074874 (+) True CI01000051_05072860_05074568
CI01000051_04796878_04799272.mRNA mRNA upstream 304206 4796878 ~ 4799321 (+) True CI01000051_04796878_04799272
CI01000051_04763063_04778692.mRNA mRNA upstream 324445 4762496 ~ 4779082 (+) True CI01000051_04763063_04778692
CI01000051_04419475_04464134.mRNA mRNA upstream 639361 4419270 ~ 4464166 (+) True CI01000051_04419475_04464134
CI01000051_04374052_04393328.mRNA mRNA upstream 709850 4372658 ~ 4393677 (+) False CI01000051_04374052_04393328
CI01000051_05126681_05142536.mRNA mRNA downstream 21995 5125751 ~ 5142617 (+) False CI01000051_05126681_05142536
CI01000051_05174862_05175926.mRNA mRNA downstream 70352 5174108 ~ 5176507 (+) True CI01000051_05174862_05175926
CI01000051_05254556_05270993.mRNA mRNA downstream 150800 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05296858_05301152.mRNA mRNA downstream 192928 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05314994_05317995.mRNA mRNA downstream 210688 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
TU249310 other upstream 51494 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 53717 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 53717 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 53717 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 53717 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1722043 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 2238285 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 2305767 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 3001887 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 3239186 8342942 ~ 8343448 (+) True G222727

Expression Profile