RNA id: TU250332


Basic Information

Item Value
RNA id TU250332
length 280
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G220726
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5199405 ~ 5199684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAGATCCTAGGTTGAGCAGAGTAACTCCCCTCGATTGCAAAGGATTAAGCGCTATGCTGAGTCCTGCTCCCCAGGATCCGGTCTGAGTTGGTTACTGCCAGTTTGCAGTCCCTCTTTCTGGACGCCTCCTCTGGAGGCAAGTGCTTTAGAGACTCTGTTTAGGTAACAGACAGGTTGCTGGCCAGACTAGGTTACTAAAGTAGGACCAGGTCGGCCTCCCTGGTGGCATTAGGGGTAGACTATGCTCCCCTGAGAAGTGACTGGCCAGGGCTCCTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250331 lncRNA upstream 408 5198774 ~ 5198997 (+) True G220725
TU250306 lncRNA upstream 21838 5177338 ~ 5177567 (+) True G220701
TU249409 lncRNA upstream 54523 5144671 ~ 5144882 (+) True G219895
TU249314 lncRNA upstream 69221 5107938 ~ 5108192 (+) True G219805
TU249395 lncRNA upstream 94258 5104922 ~ 5105147 (+) True G219881
TU250333 lncRNA downstream 2725 5202409 ~ 5202751 (+) True G220727
TU250336 lncRNA downstream 5742 5205426 ~ 5205628 (+) True G220730
TU250384 lncRNA downstream 149123 5348807 ~ 5406672 (+) True G220773
TU250428 lncRNA downstream 175998 5375682 ~ 5376525 (+) True G220807
TU250451 lncRNA downstream 233260 5432944 ~ 5433210 (+) True G220830
CI01000051_05174862_05175926.mRNA mRNA upstream 22898 5174108 ~ 5176507 (+) True CI01000051_05174862_05175926
CI01000051_05126681_05142536.mRNA mRNA upstream 56788 5125751 ~ 5142617 (+) False CI01000051_05126681_05142536
CI01000051_05072860_05074568.mRNA mRNA upstream 124531 5072629 ~ 5074874 (+) True CI01000051_05072860_05074568
CI01000051_04796878_04799272.mRNA mRNA upstream 400084 4796878 ~ 4799321 (+) True CI01000051_04796878_04799272
CI01000051_04763063_04778692.mRNA mRNA upstream 420323 4762496 ~ 4779082 (+) True CI01000051_04763063_04778692
CI01000051_05254556_05270993.mRNA mRNA downstream 54872 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05296858_05301152.mRNA mRNA downstream 97000 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05314994_05317995.mRNA mRNA downstream 114760 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05320361_05322570.mRNA mRNA downstream 120677 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05401881_05405868.mRNA mRNA downstream 202197 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
TU249310 other upstream 147372 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 149595 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 149595 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 149595 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 149595 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1626115 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 2142357 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 2209839 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2905959 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 3143258 8342942 ~ 8343448 (+) True G222727

Expression Profile