RNA id: TU250384


Basic Information

Item Value
RNA id TU250384
length 205
lncRNA type read_through
GC content 0.40
exon number 2
gene id G220773
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5348807 ~ 5406672 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGAAAACAAAAAAAAAAAAAAAAAAGTGTCCATAGACAGTGTGTTGATATCTGACTAACCCCTCACATTTATACTTTGCACAAAAATGTGGTTTTATACAGGTTTGTAGTCCAGTTTGGACTCCAGCTTCTTGGAGTCTGCCACCTTCCTCACAGCTTTCATGAAATCCTCCTGAGTCACATAATCACGGTCCGCACGAATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250336 lncRNA upstream 143179 5205426 ~ 5205628 (+) True G220730
TU250333 lncRNA upstream 146056 5202409 ~ 5202751 (+) True G220727
TU250332 lncRNA upstream 149123 5199405 ~ 5199684 (+) True G220726
TU250331 lncRNA upstream 149810 5198774 ~ 5198997 (+) True G220725
TU250306 lncRNA upstream 171240 5177338 ~ 5177567 (+) True G220701
TU250451 lncRNA downstream 26272 5432944 ~ 5433210 (+) True G220830
TU250466 lncRNA downstream 76833 5483505 ~ 5484126 (+) True G220844
TU250468 lncRNA downstream 78806 5485478 ~ 5485721 (+) True G220846
TU250472 lncRNA downstream 83396 5490068 ~ 5490287 (+) True G220850
TU250479 lncRNA downstream 91432 5498104 ~ 5498659 (+) True G220856
CI01000051_05320361_05322570.mRNA mRNA upstream 24902 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05314994_05317995.mRNA mRNA upstream 30622 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05296858_05301152.mRNA mRNA upstream 47473 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05254556_05270993.mRNA mRNA upstream 76979 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05174862_05175926.mRNA mRNA upstream 172300 5174108 ~ 5176507 (+) True CI01000051_05174862_05175926
CI01000051_05454570_05480649.mRNA mRNA downstream 47860 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05514127_05516929.mRNA mRNA downstream 106084 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05523573_05525861.mRNA mRNA downstream 116690 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05579061_05584087.mRNA mRNA downstream 172389 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 181620 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
TU249310 other upstream 296774 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 298997 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 298997 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 298997 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 298997 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1419127 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1935369 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 2002851 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2698971 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2936270 8342942 ~ 8343448 (+) True G222727

Expression Profile