RNA id: TU250451


Basic Information

Item Value
RNA id TU250451
length 245
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G220830
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5432944 ~ 5433210 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAATATTCCGTAGTTTTTACAAAATAATTTTGGCAGCTGTGGTTGCCAGAATAATTTTGTAAAAAATACAGAAAAACTGTAAACACATTTACAGAACAAACTGTAATTTACAAACAAGAAAATCTGAATGTAAACCAGTAAATTCAACAATGCACACTACTACTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATTCAGGTGGTAAAAGAGAAAGCCACATGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250384 lncRNA upstream 26272 5348807 ~ 5406672 (+) True G220773
TU250428 lncRNA upstream 56419 5375682 ~ 5376525 (+) True G220807
TU250336 lncRNA upstream 227316 5205426 ~ 5205628 (+) True G220730
TU250333 lncRNA upstream 230193 5202409 ~ 5202751 (+) True G220727
TU250332 lncRNA upstream 233260 5199405 ~ 5199684 (+) True G220726
TU250466 lncRNA downstream 50295 5483505 ~ 5484126 (+) True G220844
TU250468 lncRNA downstream 52268 5485478 ~ 5485721 (+) True G220846
TU250472 lncRNA downstream 56858 5490068 ~ 5490287 (+) True G220850
TU250479 lncRNA downstream 64894 5498104 ~ 5498659 (+) True G220856
TU250485 lncRNA downstream 88647 5521857 ~ 5522786 (+) True G220861
CI01000051_05401881_05405868.mRNA mRNA upstream 27058 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
CI01000051_05320361_05322570.mRNA mRNA upstream 109039 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05314994_05317995.mRNA mRNA upstream 114759 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05296858_05301152.mRNA mRNA upstream 131610 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05254556_05270993.mRNA mRNA upstream 161116 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05454570_05480649.mRNA mRNA downstream 21322 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05514127_05516929.mRNA mRNA downstream 79546 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05523573_05525861.mRNA mRNA downstream 90152 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05579061_05584087.mRNA mRNA downstream 145851 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 155082 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
TU249310 other upstream 380911 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 383134 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 383134 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 383134 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 383134 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1392589 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1908831 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1976313 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2672433 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2909732 8342942 ~ 8343448 (+) True G222727

Expression Profile