RNA id: TU250466


Basic Information

Item Value
RNA id TU250466
length 237
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G220844
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5483505 ~ 5484126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCTGCAACCTCTAGTTTCAGTCGCTAGAGCATCTCTTGAGATCAGAGGAGTGAGGTTTACTTGCACAGTAACTACTAGCTGGCCTCCGTTACACTCACCCCCCAAACCTCACTCCCATCCGGGTCACAGCACCAATGTAACCCCTCAGCCAAGTCCTATTCGCCCTGCTCTGAGCGGGTCTCGAACCTGGGTCTCCGGAGTGGGAGTCGGACGCTCTACCAAGGAGGCTAAAGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250451 lncRNA upstream 50295 5432944 ~ 5433210 (+) True G220830
TU250384 lncRNA upstream 76833 5348807 ~ 5406672 (+) True G220773
TU250428 lncRNA upstream 106980 5375682 ~ 5376525 (+) True G220807
TU250336 lncRNA upstream 277877 5205426 ~ 5205628 (+) True G220730
TU250333 lncRNA upstream 280754 5202409 ~ 5202751 (+) True G220727
TU250468 lncRNA downstream 1352 5485478 ~ 5485721 (+) True G220846
TU250472 lncRNA downstream 5942 5490068 ~ 5490287 (+) True G220850
TU250479 lncRNA downstream 13978 5498104 ~ 5498659 (+) True G220856
TU250485 lncRNA downstream 37731 5521857 ~ 5522786 (+) True G220861
TU250513 lncRNA downstream 87332 5571458 ~ 5571737 (+) True G220889
CI01000051_05454570_05480649.mRNA mRNA upstream 2570 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05401881_05405868.mRNA mRNA upstream 77619 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
CI01000051_05320361_05322570.mRNA mRNA upstream 159600 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05314994_05317995.mRNA mRNA upstream 165320 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05296858_05301152.mRNA mRNA upstream 182171 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05514127_05516929.mRNA mRNA downstream 28630 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05523573_05525861.mRNA mRNA downstream 39236 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05579061_05584087.mRNA mRNA downstream 94935 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 104166 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05657394_05672861.mRNA mRNA downstream 173268 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
TU249310 other upstream 431472 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 433695 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 433695 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 433695 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 433695 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1341673 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1857915 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1925397 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2621517 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2858816 8342942 ~ 8343448 (+) True G222727

Expression Profile