RNA id: TU250468


Basic Information

Item Value
RNA id TU250468
length 244
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G220846
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5485478 ~ 5485721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGAATAGGGTACAAATTGGTGTCCAATTACTGTAATTGCGACTTCTTATCTCACAATTCTGACTTTTTTTCTCAGAATTGCGAGTTATATCACACAATTCTGAGGAAAAAAGTCAAAATAGCAAGATGTAAACTTGCAATTGTGAGGAAAAAGTCAGATATGTGAAATAAAAAGTCACCATTATCCAATTTTTTTTTTCCATATCAGAAACAAGCTTCCATACTATGTAGTTCACTCGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250466 lncRNA upstream 1352 5483505 ~ 5484126 (+) True G220844
TU250451 lncRNA upstream 52268 5432944 ~ 5433210 (+) True G220830
TU250384 lncRNA upstream 78806 5348807 ~ 5406672 (+) True G220773
TU250428 lncRNA upstream 108953 5375682 ~ 5376525 (+) True G220807
TU250336 lncRNA upstream 279850 5205426 ~ 5205628 (+) True G220730
TU250472 lncRNA downstream 4347 5490068 ~ 5490287 (+) True G220850
TU250479 lncRNA downstream 12383 5498104 ~ 5498659 (+) True G220856
TU250485 lncRNA downstream 36136 5521857 ~ 5522786 (+) True G220861
TU250513 lncRNA downstream 85737 5571458 ~ 5571737 (+) True G220889
TU250571 lncRNA downstream 190743 5676464 ~ 5676963 (+) True G220922
CI01000051_05454570_05480649.mRNA mRNA upstream 4543 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05401881_05405868.mRNA mRNA upstream 79592 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
CI01000051_05320361_05322570.mRNA mRNA upstream 161573 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05314994_05317995.mRNA mRNA upstream 167293 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05296858_05301152.mRNA mRNA upstream 184144 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05514127_05516929.mRNA mRNA downstream 27035 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05523573_05525861.mRNA mRNA downstream 37641 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05579061_05584087.mRNA mRNA downstream 93340 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 102571 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05657394_05672861.mRNA mRNA downstream 171673 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
TU249310 other upstream 433445 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 435668 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 435668 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 435668 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 435668 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1340078 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1856320 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1923802 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2619922 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2857221 8342942 ~ 8343448 (+) True G222727

Expression Profile