RNA id: TU250472


Basic Information

Item Value
RNA id TU250472
length 220
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G220850
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5490068 ~ 5490287 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTAAATGACTACCTACTTACACCCCGGATCTCATTTCTCTCTAAATACTGTGTTTACCTGTGTTGATTGTTACAAGGTGGATGAAATGGCACAGAGTAAGCTGCATTCAAATTTTCCAAGTTAAAAAAAAAAAGCTGACAACAAATTTCCAAAAGTTTGTTGAAGTGCTTGGACCATCTTCACTCAACTACTGGTTCTTATCCAAAAGTCCAAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250468 lncRNA upstream 4347 5485478 ~ 5485721 (+) True G220846
TU250466 lncRNA upstream 5942 5483505 ~ 5484126 (+) True G220844
TU250451 lncRNA upstream 56858 5432944 ~ 5433210 (+) True G220830
TU250384 lncRNA upstream 83396 5348807 ~ 5406672 (+) True G220773
TU250428 lncRNA upstream 113543 5375682 ~ 5376525 (+) True G220807
TU250479 lncRNA downstream 7817 5498104 ~ 5498659 (+) True G220856
TU250485 lncRNA downstream 31570 5521857 ~ 5522786 (+) True G220861
TU250513 lncRNA downstream 81171 5571458 ~ 5571737 (+) True G220889
TU250571 lncRNA downstream 186177 5676464 ~ 5676963 (+) True G220922
TU250579 lncRNA downstream 249292 5739579 ~ 5740171 (+) True G220930
CI01000051_05454570_05480649.mRNA mRNA upstream 9133 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05401881_05405868.mRNA mRNA upstream 84182 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
CI01000051_05320361_05322570.mRNA mRNA upstream 166163 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05314994_05317995.mRNA mRNA upstream 171883 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05296858_05301152.mRNA mRNA upstream 188734 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05514127_05516929.mRNA mRNA downstream 22469 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05523573_05525861.mRNA mRNA downstream 33075 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05579061_05584087.mRNA mRNA downstream 88774 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 98005 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05657394_05672861.mRNA mRNA downstream 167107 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
TU249310 other upstream 438035 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 440258 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 440258 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 440258 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 440258 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1335512 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1851754 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1919236 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2615356 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2852655 8342942 ~ 8343448 (+) True G222727

Expression Profile