RNA id: TU250513


Basic Information

Item Value
RNA id TU250513
length 280
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G220889
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5571458 ~ 5571737 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAACCAGCCAATCTTAAAAAAATTTTTTTAAAAGTGTGCTTAAAAACTTCCTCCACATAACTCACTCAGCTCTTTCATTAAGGGTTTCCACTGTTCAACAAACAGACTCATTTTGAGTCGTAAGCTGTACGTTATTTTTTCCATTCCATAGATTTCCCTCACTGTCCGTAAGCATTCCTCAAGTGTTGGTGGCACTTTCTGGAGCCATTTAATTGTAATGTTCTTCTTTGCGGCAATTATTCGTAGGAGGTACCTTTTCTTCTCGCTTTTTATTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250485 lncRNA upstream 48672 5521857 ~ 5522786 (+) True G220861
TU250479 lncRNA upstream 72799 5498104 ~ 5498659 (+) True G220856
TU250472 lncRNA upstream 81171 5490068 ~ 5490287 (+) True G220850
TU250468 lncRNA upstream 85737 5485478 ~ 5485721 (+) True G220846
TU250466 lncRNA upstream 87332 5483505 ~ 5484126 (+) True G220844
TU250571 lncRNA downstream 104727 5676464 ~ 5676963 (+) True G220922
TU250579 lncRNA downstream 167842 5739579 ~ 5740171 (+) True G220930
TU250559 lncRNA downstream 169321 5741058 ~ 5744465 (+) True G220916
TU250572 lncRNA downstream 217791 5789528 ~ 5830106 (+) True G220923
TU250569 lncRNA downstream 373853 5945590 ~ 5946344 (+) True G220920
CI01000051_05523573_05525861.mRNA mRNA upstream 44451 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05514127_05516929.mRNA mRNA upstream 53673 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05454570_05480649.mRNA mRNA upstream 90523 5454532 ~ 5480935 (+) True CI01000051_05454570_05480649
CI01000051_05401881_05405868.mRNA mRNA upstream 165572 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
CI01000051_05320361_05322570.mRNA mRNA upstream 247553 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05579061_05584087.mRNA mRNA downstream 7324 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05588671_05593438.mRNA mRNA downstream 16555 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05657394_05672861.mRNA mRNA downstream 85657 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
CI01000051_05712567_05728993.mRNA mRNA downstream 140830 5712567 ~ 5729691 (+) True CI01000051_05712567_05728993
CI01000051_05757566_05757955.mRNA mRNA downstream 185829 5757566 ~ 5758141 (+) True CI01000051_05757566_05757955
TU249310 other upstream 519425 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 521648 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 521648 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 521648 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 521648 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1254062 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1770304 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1837786 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2533906 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2771205 8342942 ~ 8343448 (+) True G222727

Expression Profile