RNA id: TU250571


Basic Information

Item Value
RNA id TU250571
length 500
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G220922
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5676464 ~ 5676963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGACGTTTATCAAAAAGAATGAATTCTTGACCAAAATCCATAATCAGTCAGGTGGTAAGATTGAGTTACATCCCATAACACATCTTTCATTAAGAAATCTTTCATGAGGAGGCAATTTTCTGGAAGCCTGAGTAGGTGCTTCTTCAGTAGGCCCATGTTTAAACATCCAAAGTGCAAGTTGAACAGCCACAGAACTGCTACAGCATTCAAGACAGCAGGTATGCTCAAGAATTCATAATACATGAACTACATGGCATGCTATCTGCAGTGTGCAAATATTGCAAAAACAACCTACAACATTTGCCAAAATGTTCAGTACAATGAAACAACACTGTGTGGAATACTGTATCCCACAATGCAGTGAGATCAACTTGATCTTTCATTTCCAGTTTGACTGGAAATAAACTTGAAGCACTATAAAACACAAAATCGAACAGCTCTTTCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATGTCATCATTTACTCACCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250513 lncRNA upstream 104727 5571458 ~ 5571737 (+) True G220889
TU250485 lncRNA upstream 153678 5521857 ~ 5522786 (+) True G220861
TU250479 lncRNA upstream 177805 5498104 ~ 5498659 (+) True G220856
TU250472 lncRNA upstream 186177 5490068 ~ 5490287 (+) True G220850
TU250468 lncRNA upstream 190743 5485478 ~ 5485721 (+) True G220846
TU250579 lncRNA downstream 62616 5739579 ~ 5740171 (+) True G220930
TU250559 lncRNA downstream 64095 5741058 ~ 5744465 (+) True G220916
TU250572 lncRNA downstream 112565 5789528 ~ 5830106 (+) True G220923
TU250569 lncRNA downstream 268627 5945590 ~ 5946344 (+) True G220920
TU250649 lncRNA downstream 312843 5989806 ~ 5990114 (+) True G220983
CI01000051_05657394_05672861.mRNA mRNA upstream 2262 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
CI01000051_05588671_05593438.mRNA mRNA upstream 82487 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05579061_05584087.mRNA mRNA upstream 92377 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05523573_05525861.mRNA mRNA upstream 149457 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05514127_05516929.mRNA mRNA upstream 158679 5512756 ~ 5517785 (+) True CI01000051_05514127_05516929
CI01000051_05712567_05728993.mRNA mRNA downstream 35604 5712567 ~ 5729691 (+) True CI01000051_05712567_05728993
CI01000051_05757566_05757955.mRNA mRNA downstream 80603 5757566 ~ 5758141 (+) True CI01000051_05757566_05757955
CI01000051_05831209_05933202.mRNA mRNA downstream 154246 5831209 ~ 5933637 (+) True CI01000051_05831209_05933202
CI01000051_05935542_05939529.mRNA mRNA downstream 258480 5935443 ~ 5939632 (+) True CI01000051_05935542_05939529
CI01000051_05955881_05966250.mRNA mRNA downstream 278454 5955417 ~ 5966425 (+) True CI01000051_05955881_05966250
TU249310 other upstream 624431 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 626654 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 626654 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 626654 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 626654 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1148836 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1665078 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1732560 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2428680 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2665979 8342942 ~ 8343448 (+) True G222727

Expression Profile