Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU250569 |
| length | 755 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G220920 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 5945590 ~ 5946344 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU250572 | lncRNA | upstream | 115484 | 5789528 ~ 5830106 (+) | True | G220923 |
| TU250559 | lncRNA | upstream | 201125 | 5741058 ~ 5744465 (+) | True | G220916 |
| TU250579 | lncRNA | upstream | 205419 | 5739579 ~ 5740171 (+) | True | G220930 |
| TU250571 | lncRNA | upstream | 268627 | 5676464 ~ 5676963 (+) | True | G220922 |
| TU250513 | lncRNA | upstream | 373853 | 5571458 ~ 5571737 (+) | True | G220889 |
| TU250649 | lncRNA | downstream | 43462 | 5989806 ~ 5990114 (+) | True | G220983 |
| TU250633 | lncRNA | downstream | 68829 | 6015173 ~ 6016182 (+) | True | G220967 |
| TU250659 | lncRNA | downstream | 72977 | 6019321 ~ 6019757 (+) | False | G220991 |
| TU250657 | lncRNA | downstream | 73092 | 6019436 ~ 6019757 (+) | False | G220991 |
| TU250661 | lncRNA | downstream | 73092 | 6019436 ~ 6019978 (+) | True | G220991 |
| CI01000051_05935542_05939529.mRNA | mRNA | upstream | 5958 | 5935443 ~ 5939632 (+) | True | CI01000051_05935542_05939529 |
| CI01000051_05831209_05933202.mRNA | mRNA | upstream | 11953 | 5831209 ~ 5933637 (+) | True | CI01000051_05831209_05933202 |
| CI01000051_05757566_05757955.mRNA | mRNA | upstream | 187449 | 5757566 ~ 5758141 (+) | True | CI01000051_05757566_05757955 |
| CI01000051_05712567_05728993.mRNA | mRNA | upstream | 215899 | 5712567 ~ 5729691 (+) | True | CI01000051_05712567_05728993 |
| CI01000051_05657394_05672861.mRNA | mRNA | upstream | 271388 | 5657394 ~ 5674202 (+) | True | CI01000051_05657394_05672861 |
| CI01000051_05955881_05966250.mRNA | mRNA | downstream | 9073 | 5955417 ~ 5966425 (+) | True | CI01000051_05955881_05966250 |
| CI01000051_05969849_05970699.mRNA | mRNA | downstream | 23505 | 5969849 ~ 5971469 (+) | True | CI01000051_05969849_05970699 |
| CI01000051_05996289_06007664.mRNA | mRNA | downstream | 49651 | 5995995 ~ 6008558 (+) | True | CI01000051_05996289_06007664 |
| CI01000051_06113450_06128623.mRNA | mRNA | downstream | 167106 | 6113450 ~ 6129084 (+) | True | CI01000051_06113450_06128623 |
| CI01000051_06136031_06140543.mRNA | mRNA | downstream | 189687 | 6136031 ~ 6140633 (+) | True | CI01000051_06136031_06140543 |
| TU249310 | other | upstream | 893557 | 5018305 ~ 5052033 (+) | False | G219803 |
| TU249308 | other | upstream | 895780 | 4914974 ~ 5049810 (+) | False | G219803 |
| TU249297 | other | upstream | 895780 | 4944958 ~ 5049810 (+) | False | G219803 |
| TU249302 | other | upstream | 895780 | 4959429 ~ 5049810 (+) | False | G219803 |
| TU249300 | other | upstream | 895780 | 5045115 ~ 5049810 (+) | False | G219803 |
| TU250885 | other | downstream | 879455 | 6825799 ~ 6833068 (+) | True | G221187 |
| TU251039 | other | downstream | 1395697 | 7342041 ~ 7342546 (+) | True | G221319 |
| TU251108 | other | downstream | 1463179 | 7409523 ~ 7413007 (+) | True | G221386 |
| TU251044 | other | downstream | 2159299 | 8105643 ~ 8128075 (+) | True | G221324 |
| TU252626 | other | downstream | 2396598 | 8342942 ~ 8343448 (+) | True | G222727 |
