RNA id: TU251603


Basic Information

Item Value
RNA id TU251603
length 256
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G221822
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5978741 ~ 5978996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTACCCTCATGTTATCTGATATGTATACGACTGACCTTCTTAAGATAAACACAAAAAAAGGTTTTTAGAAAAAAATAATCTCTGGGAATGCTTTATGCAAGCTCATGTGTTCCTAAAAGTCGAAGCATTAAACAGCACATACAGCAATAACTACAGTAATCCACACTACCCCAATGGATGAATCAATGTCTTCTGAAGTGAAACGATACGTATTTGTAAGAAAAATACCAAATATTTTAAAATTTTAAACTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251584 lncRNA downstream 30085 5948420 ~ 5948656 (-) True G221804
TU251559 lncRNA downstream 68993 5855672 ~ 5909748 (-) True G221780
TU251519 lncRNA downstream 210149 5768371 ~ 5768592 (-) True G221745
TU251518 lncRNA downstream 215769 5762651 ~ 5762972 (-) True G221744
TU251516 lncRNA downstream 219406 5759113 ~ 5759335 (-) True G221742
TU251606 lncRNA upstream 5367 5984363 ~ 5987132 (-) True G221825
TU251611 lncRNA upstream 38637 6017633 ~ 6017970 (-) True G221830
TU251617 lncRNA upstream 121563 6100559 ~ 6100763 (-) True G221836
TU251618 lncRNA upstream 122726 6101722 ~ 6102002 (-) True G221837
TU251639 lncRNA upstream 215664 6194660 ~ 6194895 (-) True G221858
CI01000051_05949486_05950751.mRNA mRNA downstream 27888 5949343 ~ 5950853 (-) True CI01000051_05949486_05950751
CI01000051_05752434_05755144.mRNA mRNA downstream 223597 5752290 ~ 5755144 (-) True CI01000051_05752434_05755144
CI01000051_05743847_05749675.mRNA mRNA downstream 229066 5743671 ~ 5749675 (-) True CI01000051_05743847_05749675
CI01000051_05690134_05690418.mRNA mRNA downstream 288323 5689547 ~ 5690418 (-) True CI01000051_05690134_05690418
CI01000051_05679116_05685755.mRNA mRNA downstream 292785 5678771 ~ 5685956 (-) True CI01000051_05679116_05685755
CI01000051_06015846_06019716.mRNA mRNA upstream 36711 6015707 ~ 6019716 (-) True CI01000051_06015846_06019716
CI01000051_06033224_06041180.mRNA mRNA upstream 54046 6033042 ~ 6041180 (-) True CI01000051_06033224_06041180
CI01000051_06041891_06047349.mRNA mRNA upstream 62623 6041619 ~ 6047710 (-) True CI01000051_06041891_06047349
CI01000051_06052696_06090422.mRNA mRNA upstream 72057 6051053 ~ 6090422 (-) True CI01000051_06052696_06090422
CI01000051_06175507_06185039.mRNA mRNA upstream 196483 6175479 ~ 6185039 (-) True CI01000051_06175507_06185039
TU251315 other downstream 459917 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 1820638 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 3017247 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 3138109 2840270 ~ 2840632 (-) True G218861
TU248069 other downstream 3432282 2527343 ~ 2546459 (-) True G218728
TU251621 other upstream 153777 6132773 ~ 6133579 (-) True G221840
TU252631 other upstream 2363153 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 2363974 8342970 ~ 8343438 (-) True G222730

Expression Profile