RNA id: TU251606


Basic Information

Item Value
RNA id TU251606
length 432
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G221825
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5984363 ~ 5987132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTTTTGCTGGCTGGTTTTTGGAGCGCTTTGCTGCTGTCCTGTTATAGAGTATATCCGTTGGGTTTATTGGCTGGATTACTCACCCCGGAGGACTTTAAACTGTCAGAAACTTCATTGATATTGCTCCCTCTTCGACTTCCTTACCGGAAACAGTCCGCCATGGCTCTCTACAACTTCTCCAGTGATTTTTGGAAATACTCTTCCAAGTCTGCTAAGCCAGCTTTGATACCATCAAACAAATGTTGCAAGACCCACCTGTGTTGATGCAGCCTGATCTCAACAAACCTTTTCAGGCGGACAGAAGGACGGCCTGTGAGCGCAACTGCCTGACTTACACGCAACGCTTCAGCTGATGAAAGGAAGTCACGACTTGAAGAGTCCATTGCAGTGGGATATTTTTCTTTTCTCAGATAAGCAAGGGGCACAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251603 lncRNA downstream 5367 5978741 ~ 5978996 (-) True G221822
TU251584 lncRNA downstream 35707 5948420 ~ 5948656 (-) True G221804
TU251559 lncRNA downstream 74615 5855672 ~ 5909748 (-) True G221780
TU251519 lncRNA downstream 215771 5768371 ~ 5768592 (-) True G221745
TU251518 lncRNA downstream 221391 5762651 ~ 5762972 (-) True G221744
TU251611 lncRNA upstream 30501 6017633 ~ 6017970 (-) True G221830
TU251617 lncRNA upstream 113427 6100559 ~ 6100763 (-) True G221836
TU251618 lncRNA upstream 114590 6101722 ~ 6102002 (-) True G221837
TU251639 lncRNA upstream 207528 6194660 ~ 6194895 (-) True G221858
TU251677 lncRNA upstream 409649 6396781 ~ 6396987 (-) True G221890
CI01000051_05949486_05950751.mRNA mRNA downstream 33510 5949343 ~ 5950853 (-) True CI01000051_05949486_05950751
CI01000051_05752434_05755144.mRNA mRNA downstream 229219 5752290 ~ 5755144 (-) True CI01000051_05752434_05755144
CI01000051_05743847_05749675.mRNA mRNA downstream 234688 5743671 ~ 5749675 (-) True CI01000051_05743847_05749675
CI01000051_05690134_05690418.mRNA mRNA downstream 293945 5689547 ~ 5690418 (-) True CI01000051_05690134_05690418
CI01000051_05679116_05685755.mRNA mRNA downstream 298407 5678771 ~ 5685956 (-) True CI01000051_05679116_05685755
CI01000051_06015846_06019716.mRNA mRNA upstream 28575 6015707 ~ 6019716 (-) True CI01000051_06015846_06019716
CI01000051_06033224_06041180.mRNA mRNA upstream 45910 6033042 ~ 6041180 (-) True CI01000051_06033224_06041180
CI01000051_06041891_06047349.mRNA mRNA upstream 54487 6041619 ~ 6047710 (-) True CI01000051_06041891_06047349
CI01000051_06052696_06090422.mRNA mRNA upstream 63921 6051053 ~ 6090422 (-) True CI01000051_06052696_06090422
CI01000051_06175507_06185039.mRNA mRNA upstream 188347 6175479 ~ 6185039 (-) True CI01000051_06175507_06185039
TU251315 other downstream 465539 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 1826260 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 3022869 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 3143731 2840270 ~ 2840632 (-) True G218861
TU248069 other downstream 3437904 2527343 ~ 2546459 (-) True G218728
TU251621 other upstream 145641 6132773 ~ 6133579 (-) True G221840
TU252631 other upstream 2355017 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 2355838 8342970 ~ 8343438 (-) True G222730

Expression Profile